G34473 (galk1,LOC107755403)


Basic Information

Item Value
gene id G34473
gene name galk1,LOC107755403
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 4939007 ~ 4941347 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU46366
ATACAGTCCATTAGTTATTGTCCCAGTGGTGTTCCATCAACTGGTAGACAGAACAGTATTTGAAAGAACTGTACCTGCAGTCAATAAGCAATGCATGACCCTCCTTTCCCAGCACAGAGACAAACTGGTCCATAATACCACAGGGTACTCCAGCATGGGTGTGCTCTGCCTGCTGACAAGCTACTGCCTTTGCCACTTTATCCCCATCATCTGGACACAGTTGCTGAAGGAAAGTGTACACTGCCACTTCTAATGACGCTGAGCTGGACAATCCACCCCCTAGTGGAACACTGCTGGCGATCACAGCTTTAAATGCAGGCAAGGGTTGTGCTCTATAGTGTTGTACCACCCCTTTAACATAGTTGGCCCAGGCTGGCCTCCCTCTGGTCAGGGGTGAACTCTCGGTCGGCAGATCGAAGTCCACTCTCCTCGGCTCATCTGCGGAGTCAGTAATGGTTTCAACTGAGCAGCTTTGGCCAGAGGTGCTGCTGCCCACTATAACTGTAACCAATGGCAACCATTGGCAGAACCAGTCCCTGGTTGTAGTCAGTGTGCTCTCCTATCAGGTTCACCCGCCCTGGAGCACACACAGCCACCTGCGCTTCTCCCCCATAACTCCGCTCATAAACACGGAGAGCAGCGGCGAGCAGAGCCCCCACACCAGCCGCAGACCCCTCTCCATCCATCCGCACACAGCGATATTAACACTGATCACTACTATACGCACACGAGCTGATCAGTGAAAGAGAAAACTTCCTGTATCTcagt

Function

symbol description
galk1 Predicted to enable galactokinase activity. Predicted to be involved in galactose metabolic process. Predicted to act upstream of or within carbohydrate phosphorylation. Predicted to be located in cytoplasm. Predicted to be active in cytosol. Human ortholog(s) of this gene implicated in cataract and galactokinase deficiency. Orthologous to human GALK1 (galactokinase 1).

NR:

description
PREDICTED: galactokinase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU46366 True 768 lncRNA 0.38 4 4939007 4941347

Neighbor

gene id symbol gene type direction distance location
mrpl43 mrpl43,LOC107722220,LOC107581592,LOC107565786 coding downstream 8300 4927516 ~ 4930707 (-)
mfsd13a mfsd13a,LOC107565800,LOC107581593,LOC107684076,LOC107690908,LOC107755491 coding downstream 60248 4870049 ~ 4878759 (-)
LOC103024913 trim8,trim8b,LOC107581594,LOC107684075,LOC107565801,LOC107755490 coding downstream 70878 4853007 ~ 4868129 (-)
sfxn2 sfxn2,LOC107722238,LOC107581595,LOC107755483 coding downstream 91599 4819922 ~ 4847408 (-)
LOC111192353 LOC106633734 coding downstream 175938 4761586 ~ 4763069 (-)
entpd1 NA coding upstream 158621 5099968 ~ 5125198 (-)
LOC103029658 crygmx,LOC103029658,LOC108426431,LOC107684144,LOC107566847,LOC107755411,LOC107581668 coding upstream 219561 5160908 ~ 5163466 (-)
LOC103030716 crygmxl2,LOC103030716,LOC108426411,LOC106516994,LOC104933141,LOC103368160,LOC107581669,LOC107702435 coding upstream 222603 5163950 ~ 5165625 (-)
vti1a vti1a,LOC107566351,LOC107702459 coding upstream 459581 5400928 ~ 5571634 (-)
acsl5 acsl5,LOC107702457,LOC107755526,LOC107566323,LOC107581566,LOC107722228,LOC107684041 coding upstream 637983 5579330 ~ 5596438 (-)
G34470 NA non-coding downstream 613 4938091 ~ 4938394 (-)
G34464 NA non-coding downstream 11772 4926988 ~ 4927235 (-)
G34458 NA non-coding downstream 14774 4923248 ~ 4924233 (-)
G34422 timp2,timp2a,LOC103024286,LOC108274067,LOC107755484,LOC107684079,LOC107565802,LOC107690949 non-coding downstream 55799 4799111 ~ 4883208 (-)
G34439 arl3,LOC103024595,LOC105908595,LOC106589841,LOC107684078 non-coding downstream 106504 4829153 ~ 4832503 (-)
G34475 llgl2,LOC107684069,LOC107722216 non-coding upstream 2553 4943900 ~ 4954001 (-)
G34477 llgl2,LOC107684069 non-coding upstream 18041 4959388 ~ 4960923 (-)
G34505 chac2,LOC107749368,LOC107686371 non-coding upstream 26254 4967601 ~ 4971094 (-)
G34526 NA non-coding upstream 137188 5078535 ~ 5078848 (-)
G34541 NA non-coding upstream 201725 5143072 ~ 5143335 (-)
G34214 NA other downstream 1055538 3836621 ~ 3883469 (-)
prr15l prr15l other downstream 1149815 3783125 ~ 3789192 (-)
G34046 NA other downstream 1744630 3181168 ~ 3194377 (-)
G33904 NA other downstream 2629678 2303262 ~ 2309329 (-)
G33836 LOC103393566,LOC105888730 other downstream 2742912 2194757 ~ 2196095 (-)
psme4 psme4,psme4b,LOC108426507,LOC107584369,LOC107749369 other upstream 30351 4971698 ~ 4995913 (-)
tcf7l2 tcf7l2,LOC107755529,LOC107566231,LOC106949585 other upstream 314272 5255619 ~ 5362486 (-)
ccdc186 ccdc186,LOC107755417,LOC107689962 other upstream 962241 5903588 ~ 5928154 (-)
G34770 NA other upstream 994488 5935835 ~ 5939400 (-)
ablim1 ablim1 other upstream 1107654 6049001 ~ 6147311 (-)

Expression


Co-expression Network