G34500


Basic Information

Item Value
gene id G34500
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 5054363 ~ 5056352 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU46399
TCTAAAATCTGCCAAATGCCAATTGCTGACACATTAATCTCAAATGTATAGTTTACGCCATTAATtaagtaggaaaaaaaatatgaaagcaCAGATTCAGATTGGATGAAGAATCACATTCTTAGGTCTGTAATAATAGCACTAAAGAGTGTGTGATGATGGGACTGTCTGAAAAGCTTAGCTTTTGGGCCGTATGATTGTAATTTATGGACTAATGACAGCTATGACATACCAGAAAGAGTTTTTAAGAGCGGTTATATAACATACGGATTTTAGTCTTTTTCTGACCTTTGTCTGAGGTGAAGGAATCAGACTTGTGATAAAAATGGCTATAATGAAATCCCTCTGGGAATTTCTTAACGTATGTTTCTGCTCATCTGCAAATGAATGGTTCCAGGCCCATCCGTGGCAAGGGTTCATTCACAGCAATTGATTAGACGAAAACGGTGAAGTAAAGAGTGAAGACTGATGAGTGCGTCCCATTCTGGAAGCATTTGTTAAAGTGACGGAGTGATGTTTTGGGCTCTGTGTGAAGCTTTAAGGGGAAACAGTACTTGGGGGAATAATAATGAAACCCCTCAGAAATCTCCCTGCTCTGAAAGAATGCCCACTTTTCACAGCTTTCAGATGTGGCAGTGTGATCTTTAAGGAATTCAGAGGCTGATGtggtagcagtgtgtgtgtgtgttgtgtgtgtgtgtgtgtgcgtgtgtgcagcTAGCACAACAGTATAATTAAGGGCTAATTAAGAGGAAGTGCTTTGTTAAATCTAACAGTCGTGCCACATGgcaacagaaaaacaagaagGATTTTAAACTCAACCGCACACCATACACATCCATTCTCCTGCCTTAACATATGCAAACATTCTACCTTCATTTAGTTAGAAGTGCAGAAGTGCACTTTTAAAACTAAACGGTGTCAAAAAGGCTTCTGTGCAAATGAACCACCATCCTTCCATCCTAATTTCTCGTAAATTAAATGGCTGTTTGTTAAAAGTGCCTCCAAATACTaaaatatgctttattatgACACAACAGTATGACAGCACTAGAAGTAGTAGGAGTTCTGTACTCTGACAGCGtataattttatgtatttgtaaacggatttttattgcatttgtgGACATTGACCCAACCCATATTCTTCTCCCCTCCAGCACTGTGTCTAATTAAACGTCAATTTTGGTTGAAAAGATATTAATGTAATGTTCTCTTTTCACTTTGATCAAAAATAGACCAAAGTTTCAACTAACATCTCtgccatttttttcagcatcttcTTAACTCTATCAGCAGTTTCTCATGACCggCATAGCTATACATTTGCTGCAGTTACAGTACACCCAAAATGTGATTTGTCTACAGTTAGCTTCAGTTACAATGAATAGCATTAGATgtcattgtat

Function

GO:

id name namespace
GO:0051128 regulation of cellular component organization biological_process
GO:0001558 regulation of cell growth biological_process
GO:0040007 growth biological_process
GO:0040008 regulation of growth biological_process
GO:0016049 cell growth biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU46399 True 1411 lncRNA 0.38 2 5054363 5056352

Neighbor

gene id symbol gene type direction distance location
thbs2 thbs2b,LOC108426506,LOC108274281,LOC107755534,LOC107702453,LOC107566173,LOC107581559,LOC107707836 coding upstream 858 5030807 ~ 5053505 (+)
chac2 chac2,LOC107749368,LOC107686371 coding upstream 83028 4967574 ~ 4971335 (+)
llgl2 llgl2,LOC107690902,LOC107684069,LOC107755492,LOC107722216 coding upstream 87933 4943870 ~ 4966430 (+)
galk1 galk1 coding upstream 110914 4938999 ~ 4943449 (+)
twnk cunh10orf2,peo1,LOC107755431,LOC107690904,LOC107565785 coding upstream 117337 4931415 ~ 4937026 (+)
LOC103029028 LOC108426433,LOC107581628 coding downstream 13701 5070053 ~ 5077912 (+)
LOC103044692 LOC108426432 coding downstream 30657 5087009 ~ 5099703 (+)
aldh18a1 aldh18a1,LOC107755531 coding downstream 90988 5147340 ~ 5158697 (+)
zdhhc6 zdhhc6,LOC107684040,LOC107722226,LOC107755527,LOC107702458 coding downstream 517113 5573465 ~ 5579442 (+)
LOC103039360 LOC108426428 coding downstream 539729 5596081 ~ 5607391 (+)
G34489 NA non-coding upstream 74951 4978747 ~ 4979412 (+)
G34485 NA non-coding upstream 81276 4971785 ~ 4973087 (+)
G34409 mfsd13a,LOC107755491,LOC107565800,LOC107690908 non-coding upstream 178809 4875138 ~ 4875554 (+)
G34410 mfsd13a non-coding upstream 182943 4870364 ~ 4871420 (+)
G34396 sfxn2 non-coding upstream 226457 4824343 ~ 4827906 (+)
G34532 NA non-coding downstream 51458 5107810 ~ 5125290 (+)
G34534 NA non-coding downstream 79047 5135399 ~ 5135654 (+)
G34535 NA non-coding downstream 86629 5142981 ~ 5143335 (+)
G34536 NA non-coding downstream 87396 5143748 ~ 5144056 (+)
G34537 NA non-coding downstream 88070 5144422 ~ 5144636 (+)
LOC103025551 sema4g other upstream 129597 4882556 ~ 4924766 (+)
G34309 NA other upstream 876280 4171051 ~ 4178083 (+)
tbkbp1 tbkbp1,LOC107565677,LOC107754096,LOC107677885,LOC107743771 other upstream 1395231 3564030 ~ 3659132 (+)
amz2 amz2 other upstream 2997400 2050742 ~ 2056963 (+)
LOC111192342 dnah9 other upstream 3666344 1369173 ~ 1388019 (+)
dnmbp dnmbp,LOC107722208,LOC107684043 other downstream 636170 5692522 ~ 5756116 (+)
LOC103045604 LOC108426437,LOC107683136 other downstream 1190294 6246646 ~ 6258050 (+)
slc38a10 slc38a10,LOC102792191,LOC107749860 other downstream 1445793 6502145 ~ 6541460 (+)
LOC103029551 qki2,LOC103029551,LOC108426533,LOC107684089,LOC108274051,LOC107749853,LOC107755469 other downstream 1536255 6592607 ~ 6663607 (+)
G34931 NA other downstream 1674602 6730954 ~ 6731424 (+)

Expression


Co-expression Network