G34542


Basic Information

Item Value
gene id G34542
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 5143724 ~ 5144056 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU46457
aaatctgtctgatatcacagttcaatttcatatagtcctgatagtacactacttgtatgtgtcactcacttaatatcagaacattttgatgtgtcatttcaaaataaaggccctttaaattgtaacatttatgtaattttacacaatgtttagactgttattaaaataaatctgtctgatatcacagttcaatttcatatagtcctgatagtacactacttgtatgtttcactcaattactatcagaacattttgatgtgtcattttaaaataaaagccctttaaattgtaacatttatgtaattttacacaatgtttagactgttattaaaa

Function

GO:

id name namespace
GO:0006030 chitin metabolic process biological_process
GO:0006032 chitin catabolic process biological_process
GO:0006040 amino sugar metabolic process biological_process
GO:0042737 drug catabolic process biological_process
GO:0009057 macromolecule catabolic process biological_process
GO:0046348 amino sugar catabolic process biological_process
GO:1901071 glucosamine-containing compound metabolic process biological_process
GO:1901072 glucosamine-containing compound catabolic process biological_process
GO:1901136 carbohydrate derivative catabolic process biological_process
GO:0006022 aminoglycan metabolic process biological_process
GO:0006026 aminoglycan catabolic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU46457 True 333 lncRNA 0.27 1 5143724 5144056

Neighbor

gene id symbol gene type direction distance location
entpd1 NA coding downstream 18526 5099968 ~ 5125198 (-)
mrpl43 mrpl43,LOC107722220,LOC107581592,LOC107565786 coding downstream 213017 4927516 ~ 4930707 (-)
mfsd13a mfsd13a,LOC107565800,LOC107581593,LOC107684076,LOC107690908,LOC107755491 coding downstream 264965 4870049 ~ 4878759 (-)
LOC103024913 trim8,trim8b,LOC107581594,LOC107684075,LOC107565801,LOC107755490 coding downstream 275595 4853007 ~ 4868129 (-)
sfxn2 sfxn2,LOC107722238,LOC107581595,LOC107755483 coding downstream 296316 4819922 ~ 4847408 (-)
LOC103029658 crygmx,LOC103029658,LOC108426431,LOC107684144,LOC107566847,LOC107755411,LOC107581668 coding upstream 16852 5160908 ~ 5163466 (-)
LOC103030716 crygmxl2,LOC103030716,LOC108426411,LOC106516994,LOC104933141,LOC103368160,LOC107581669,LOC107702435 coding upstream 19894 5163950 ~ 5165625 (-)
vti1a vti1a,LOC107566351,LOC107702459 coding upstream 256872 5400928 ~ 5571634 (-)
acsl5 acsl5,LOC107702457,LOC107755526,LOC107566323,LOC107581566,LOC107722228,LOC107684041 coding upstream 435274 5579330 ~ 5596438 (-)
tectb tectb,LOC107755437,LOC107566341,LOC107702437,LOC107722201 coding upstream 456312 5600368 ~ 5687159 (-)
G34541 NA non-coding downstream 389 5143072 ~ 5143335 (-)
G34526 NA non-coding downstream 64876 5078535 ~ 5078848 (-)
G34505 chac2,LOC107749368,LOC107686371 non-coding downstream 172630 4967601 ~ 4971094 (-)
G34477 llgl2,LOC107684069 non-coding downstream 182801 4959388 ~ 4960923 (-)
G34475 llgl2,LOC107684069,LOC107722216 non-coding downstream 189723 4943900 ~ 4954001 (-)
G34544 aldh18a1,LOC107684039 non-coding upstream 6254 5150310 ~ 5150963 (-)
G34543 aldh18a1,LOC107707764 non-coding upstream 7316 5151372 ~ 5152413 (-)
G34556 NA non-coding upstream 46977 5191033 ~ 5193859 (-)
G34682 NA non-coding upstream 247039 5391095 ~ 5391320 (-)
G34688 zdhhc6,LOC107684040,LOC107722226,LOC107581631 non-coding upstream 429417 5573473 ~ 5574758 (-)
psme4 psme4,psme4b,LOC108426507,LOC107584369,LOC107749369 other downstream 147811 4971698 ~ 4995913 (-)
G34214 NA other downstream 1260255 3836621 ~ 3883469 (-)
prr15l prr15l other downstream 1354532 3783125 ~ 3789192 (-)
G34046 NA other downstream 1949347 3181168 ~ 3194377 (-)
G33904 NA other downstream 2834395 2303262 ~ 2309329 (-)
tcf7l2 tcf7l2,LOC107755529,LOC107566231,LOC106949585 other upstream 111563 5255619 ~ 5362486 (-)
ccdc186 ccdc186,LOC107755417,LOC107689962 other upstream 759532 5903588 ~ 5928154 (-)
G34770 NA other upstream 791779 5935835 ~ 5939400 (-)
ablim1 ablim1 other upstream 904945 6049001 ~ 6147311 (-)
LOC103026268 bahcc1 other upstream 1222628 6366684 ~ 6513701 (-)

Expression


Co-expression Network