G34543 (aldh18a1,LOC107707764)


Basic Information

Item Value
gene id G34543
gene name aldh18a1,LOC107707764
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 5151372 ~ 5152413 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU46458
CCTTCTACATCAGAAAGAGCAATGAGGAGGTCCACTCTCATCTCCACTGCTAGCCGAGCCGCCAAACTGTCATTGTCCTTGATGCTTATGACGTTTACCCCCTGGAGATCACTGTTGGGCTCTGGAGGAGGCACCACGGCATCATTGGTGTTGATGATGGGTACGATGTTCATACGCAGCAGCTCGTGCAAGGTGCTGTTAAGATTTCGTCTCTTCTGGTCGTCATGGAAGTCCAAGTTTGTCACcaa

Function

symbol description
aldh18a1 Predicted to enable glutamate-5-semialdehyde dehydrogenase activity. Predicted to be involved in L-proline biosynthetic process. Predicted to act upstream of or within phosphorylation and proline biosynthetic process. Predicted to be located in cytoplasm. Predicted to be active in mitochondrion. Is expressed in several structures, including central nervous system; endocrine system; eye; immature eye; and tail bud. Human ortholog(s) of this gene implicated in cataract; cutis laxa (multiple); enterocele; and hereditary spastic paraplegia (multiple). Orthologous to human ALDH18A1 (aldehyde dehydrogenase 18 family member A1).

NR:

description
PREDICTED: delta-1-pyrroline-5-carboxylate synthase-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU46458 True 248 lncRNA 0.42 2 5151372 5152413

Neighbor

gene id symbol gene type direction distance location
entpd1 NA coding downstream 26174 5099968 ~ 5125198 (-)
mrpl43 mrpl43,LOC107722220,LOC107581592,LOC107565786 coding downstream 220665 4927516 ~ 4930707 (-)
mfsd13a mfsd13a,LOC107565800,LOC107581593,LOC107684076,LOC107690908,LOC107755491 coding downstream 272613 4870049 ~ 4878759 (-)
LOC103024913 trim8,trim8b,LOC107581594,LOC107684075,LOC107565801,LOC107755490 coding downstream 283243 4853007 ~ 4868129 (-)
sfxn2 sfxn2,LOC107722238,LOC107581595,LOC107755483 coding downstream 303964 4819922 ~ 4847408 (-)
LOC103029658 crygmx,LOC103029658,LOC108426431,LOC107684144,LOC107566847,LOC107755411,LOC107581668 coding upstream 8495 5160908 ~ 5163466 (-)
LOC103030716 crygmxl2,LOC103030716,LOC108426411,LOC106516994,LOC104933141,LOC103368160,LOC107581669,LOC107702435 coding upstream 11537 5163950 ~ 5165625 (-)
vti1a vti1a,LOC107566351,LOC107702459 coding upstream 248515 5400928 ~ 5571634 (-)
acsl5 acsl5,LOC107702457,LOC107755526,LOC107566323,LOC107581566,LOC107722228,LOC107684041 coding upstream 426917 5579330 ~ 5596438 (-)
tectb tectb,LOC107755437,LOC107566341,LOC107702437,LOC107722201 coding upstream 447955 5600368 ~ 5687159 (-)
G34544 aldh18a1,LOC107684039 non-coding downstream 409 5150310 ~ 5150963 (-)
G34542 NA non-coding downstream 7316 5143724 ~ 5144056 (-)
G34541 NA non-coding downstream 8037 5143072 ~ 5143335 (-)
G34526 NA non-coding downstream 72524 5078535 ~ 5078848 (-)
G34505 chac2,LOC107749368,LOC107686371 non-coding downstream 180278 4967601 ~ 4971094 (-)
G34556 NA non-coding upstream 38620 5191033 ~ 5193859 (-)
G34682 NA non-coding upstream 238682 5391095 ~ 5391320 (-)
G34688 zdhhc6,LOC107684040,LOC107722226,LOC107581631 non-coding upstream 421060 5573473 ~ 5574758 (-)
G34708 NA non-coding upstream 492493 5644906 ~ 5645105 (-)
G34713 NA non-coding upstream 506611 5659024 ~ 5659904 (-)
psme4 psme4,psme4b,LOC108426507,LOC107584369,LOC107749369 other downstream 155459 4971698 ~ 4995913 (-)
G34214 NA other downstream 1267903 3836621 ~ 3883469 (-)
prr15l prr15l other downstream 1362180 3783125 ~ 3789192 (-)
G34046 NA other downstream 1956995 3181168 ~ 3194377 (-)
G33904 NA other downstream 2842043 2303262 ~ 2309329 (-)
tcf7l2 tcf7l2,LOC107755529,LOC107566231,LOC106949585 other upstream 103206 5255619 ~ 5362486 (-)
ccdc186 ccdc186,LOC107755417,LOC107689962 other upstream 751175 5903588 ~ 5928154 (-)
G34770 NA other upstream 783422 5935835 ~ 5939400 (-)
ablim1 ablim1 other upstream 896588 6049001 ~ 6147311 (-)
LOC103026268 bahcc1 other upstream 1214271 6366684 ~ 6513701 (-)

Expression


Co-expression Network