G34587 (vti1a,LOC107566351,LOC107702459)


Basic Information

Item Value
gene id G34587
gene name vti1a,LOC107566351,LOC107702459
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 5400955 ~ 5571681 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU46514
GAAAAACAATAGCCTTTACATTTCACTAAAATCAGTTTCAAATCCACTGAAAGAGGGGAAAACACATCAATACAGATAACAAATAACCATCAAcatgaaataaatacagataagAGTCCTCATTAGTACTCGGTGTGTGCGCCAACGAATGATTATGCCAAACATCATTAGTAAAGCTATGAGCGGCCATAGGATTCGGGAGTGGTCCTGCTGGTTTGCCAGAACACACGCAAGGCCTTTTATTGACCTTAGAAGAACAGCGTGAGAAGCTACTAATCCTGGATGAAGCTCCACTGAGAgaggcgtgtgtgtgtctgctgctAAAGGCATTGACCTTTGGGCCGTGTGTAGTGTGTGATTCTGCACTGTGTGCTAAGTGCTGCTGCACTGGGGGCCTGACTGTAAGGCCCTTTCTGCACACGCCACACACCCGGGAGAGAGTAAGGACACTATGCTGGGactatgtatatgtatacagaaatacacacacacacacacatgcttgtgcacatacatacatacatacatacatatagttGGAATTTAAACATTATCgggacaaaaagtaaaaaaataatattaataaaataatacagcagGTCGTAGTAAAGAAAGCCCTTCCCCCACCCGTCCCAATCAAGATTTCCAATCTCCTGCTGTTATTGGTCCACCTAGGTCCAGATGTCCACACATGGCCAGTCTATAGGGAGTCAAAATGGAGATGCCATGCTAAAAGGATGGAAGAGTACAGTCCTAGTAATATAAACGTAAAACATAAATAGGATGTAGAGATAGAAGAGCCAGTTGTAGCTCTGCTCTggaagagcgagagaaagagcagaGGAGATCATCTGTCACTGCCCACCAGGAATGATTCATGTGAACAATTTGTTCTAATTACTCCAGCCCGCTTTTGTCGCTATTaatcacacgctcacacacacacacacacgcacacacacaggaccaGTCAGTGGAGATCAGTGCCCTCGCAGATTGAAATAGATGGCCAGGACGATGGTGAGGAGGATGATGGCGCCCAGGATGAAGACCAGGATGCGATTCTGAATGATCCTTCTCAGCATGCCCGTCAGGACCCGCGAGCTCTTGCCCAGGTTAGCATCGGTCTCTCTCAGCCGATCTCTGGATCTCTGGATCTTCTCACGGTCGCTGTGCAGGTTGGATAGGATCTCCTGTCCTATTTGCTCAGTTTCCACAGCTATCTGGTAGCCAGCCTCCAGTCTCCGAGATGACCTTTCCAGCATCTCTGTGTTGTCCAACAGATGTGCTCTCTGATTCTCAGAGGAGCTGCCGTCATCCCCGAGGAGCTCGTTCCGCACCTCATCACTGTAGGCAATACGTGACCTTTTAAAGTCTTTCTCCAGCTTCTCCAGCTCCTGCTTGTAGCTCTTCAGGCGGCTGTTGTACATTCCTCTGCTCTGGACAGGAATCTCGCGCACCTCCAGATCCATCTGCTCCAACAACTCTCTGACTTCTTCAAGCTGTTTGTCGACATTTAGAACCAGCTGCGTCTTCTCCTCGCCGCTGAGTTTGGGTATTCTGCCGGTTTTGTTGGTAATTTCCGCAGTGAGGGTGCCGAACTCCTGCTCGTAGGCTTCAAAATCGGACGACATGTCTGTAAACGGTGGGTTCTGGTGTGTTACCGACAGATAGCGGTGGATACTCTCCTGCTGCTGTAGCCAATGTTGTTGTTGACGTCACCGTCACTTCCTGGCTGTGTTACTGAACCCGTGTTTCGCTGAAAACAGCTCGCGGGTCTAAATTGGTTCTGGCTGAA

Function

symbol description
vti1a Predicted to enable SNAP receptor activity and SNARE binding activity. Predicted to be involved in Golgi vesicle transport; macroautophagy; and retrograde transport, endosome to Golgi. Predicted to act upstream of or within intracellular protein transport and vesicle-mediated transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of SNARE complex. Predicted to be active in Golgi apparatus; cytoplasmic vesicle membrane; and endoplasmic reticulum membrane. Orthologous to human VTI1A (vesicle transport through interaction with t-SNAREs 1A).

NR:

description
PREDICTED: vesicle transport through interaction with t-SNAREs homolog 1A isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU46514 True 1798 lncRNA 0.48 8 5400955 5571681

Neighbor

gene id symbol gene type direction distance location
aldh18a1 aldh18a1,LOC107755531 coding upstream 242258 5147340 ~ 5158697 (+)
LOC103044692 LOC108426432 coding upstream 301252 5087009 ~ 5099703 (+)
LOC103029028 LOC108426433,LOC107581628 coding upstream 323043 5070053 ~ 5077912 (+)
thbs2 thbs2b,LOC108426506,LOC108274281,LOC107755534,LOC107702453,LOC107566173,LOC107581559,LOC107707836 coding upstream 347450 5030807 ~ 5053505 (+)
chac2 chac2,LOC107749368,LOC107686371 coding upstream 429620 4967574 ~ 4971335 (+)
zdhhc6 zdhhc6,LOC107684040,LOC107722226,LOC107755527,LOC107702458 coding downstream 1784 5573465 ~ 5579442 (+)
LOC103039360 LOC108426428 coding downstream 24400 5596081 ~ 5607391 (+)
gpam gpam,LOC107702461,LOC107755524,LOC107566297,LOC107581571,LOC107722223 coding downstream 44014 5615695 ~ 5641795 (+)
LOC103038312 NA coding downstream 70636 5642317 ~ 5653677 (+)
cpn1 cpn1,LOC107722209,LOC107684044,LOC107702463 coding downstream 97386 5669067 ~ 5684163 (+)
G34580 NA non-coding upstream 14777 5385883 ~ 5386178 (+)
LOC111192354 NA non-coding upstream 101934 5209468 ~ 5299021 (+)
G34552 crygmxl2,LOC103030716,LOC108426411,LOC107581669,LOC107702435 non-coding upstream 235348 5164666 ~ 5165607 (+)
G34539 NA non-coding upstream 254368 5146076 ~ 5146587 (+)
G34538 NA non-coding upstream 255770 5144806 ~ 5145185 (+)
G34605 NA non-coding downstream 87288 5658969 ~ 5659199 (+)
G34606 NA non-coding downstream 87585 5659266 ~ 5659902 (+)
G34615 NA non-coding downstream 167933 5739614 ~ 5742444 (+)
G34602 NA non-coding downstream 217077 5788758 ~ 5793818 (+)
G34636 dclre1a non-coding downstream 273221 5844902 ~ 5847925 (+)
LOC103025551 sema4g other upstream 476189 4882556 ~ 4924766 (+)
G34309 NA other upstream 1222872 4171051 ~ 4178083 (+)
tbkbp1 tbkbp1,LOC107565677,LOC107754096,LOC107677885,LOC107743771 other upstream 1741823 3564030 ~ 3659132 (+)
amz2 amz2 other upstream 3343992 2050742 ~ 2056963 (+)
LOC111192342 dnah9 other upstream 4012936 1369173 ~ 1388019 (+)
dnmbp dnmbp,LOC107722208,LOC107684043 other downstream 120841 5692522 ~ 5756116 (+)
LOC103045604 LOC108426437,LOC107683136 other downstream 674965 6246646 ~ 6258050 (+)
slc38a10 slc38a10,LOC102792191,LOC107749860 other downstream 930464 6502145 ~ 6541460 (+)
LOC103029551 qki2,LOC103029551,LOC108426533,LOC107684089,LOC108274051,LOC107749853,LOC107755469 other downstream 1020926 6592607 ~ 6663607 (+)
G34931 NA other downstream 1159273 6730954 ~ 6731424 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000063_07693559_07697280 NA coding CI01000063 null 7693559 ~ 7697280 (+)
bowfin (Amia calva) AMCG00003283 vti1a,LOC107566351 coding CM030139.1 CM030139.1 17292516 ~ 17304410 (-)