G34615


Basic Information

Item Value
gene id G34615
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 5739614 ~ 5742444 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU46556
GTTAAGAATCCAGTTAGTTTGATTGCATTTGAAATGTTACtgtgattaaattttttttctatagctAGTTTGATCATGgattgatatatttttaaataaaaggctATTCTCAGAAGCACCTCAGCAAAAGCCTGGGCTGAGTGTGGAGATGTGGAAAGGTCACCATAATGAAAGATCCCTCTGATCTTGATGGAATTTGGAGTAATTAGTTTGGGCCACTTATTCTGGGAAGGATCAGTCATTCTGAAATGATGGTCCAAACCTGTTCAAATCACATTGTCACTGATCTGCTGATATCCCTTTAAAACAAAGGTTTGGAATGTGACCTGAACTATTACCCTGAGAAAATGTAGTGTGAATATATGCCGTGCTGGAGCAGACCATCTGTATGCAATATATTAATCCTATAATTCACTTTAAGTGTATCTATTCTATTTTTGCatgacttgattttttttatataaaattatacatattatatataaaaagagttttttttgtatagatAAAGTCTCACATCTATAGAGAACACACAACACATAAAATCCATGCTTTTGTTTAGTGCCTGAACCTTCATGACCAGGGAATAATGATTTATGACCATCATTGCATTGCCTGGTTATGGGGTCAGGTTTTTGCAGGACCACCCCTGCAGTGCCACCACTGGGAATGGCCCATTTCTGCCCCTGGAATATGATGTAGACTGGTAGGACCAGCATTGTGGAAGGAGACCAAACACAGTGCCACAAGCGATTACTTCCACTGCACGTCAACAGATTAgagtgagggggagagagaggccTTTTGTGTGCCTGTCTGAGATTGCCCACTCAACTATTCACCAGCCCATGGCACACATACGTTACTGTCAGAGCCCTGGCACCATTTCTGTAGCTTTACCAAGTCCTCGTGTAGCACTCTTAACCCAGGAATGCACTCACATACACATAGATTCAGTGAGAGTACTAGAAACACTATATCCCTAAAACTACAGGAGCCAAATGAATTGTTTGGAGAGATGCCATGAAGCTAGTTTTAATGAAATTTTGATGGATGGTTCTtttttaaatggcaaaagaTAGCATGAAGCTTATTAGCTAAAGTGGACTTTAACATATTAAGTGTTTCTGCAACAGATTTCAGACTTCAGAGTGACTCCAAGCACTGTAGAGATTTATTAGGTTGCACAGCGCACCCCACCTCATTTTTAAAGTTATATCTGTCAAAACTAGGGTTGTAagaatatatcatatattaaagtattacaatattttgtttttacaatactgtatcaaattttaaaaacacaatattgatGTTTAAATATTCCTTTACATGTAAAGTTTTGTTGTTCTAGACCACTAGAAAGCAGTGTTTTACTCAAATTCTATAAATATGATAAGATATGATCCtcaaatttgattaaaatagtCAAAATAGCAGTATGTCACCTTACTTACAGTAtctcaatatattgtgatatattgaatcgTAACACCTGTGTTATGATATGCTAATACACAGCCATAATTGAGACCACAGAAAGTCACAGTAGATCACACATGATTGATAGCATGAATTTGCATAGACAAAAGCTCCCACACTTTAGACAAATGTTTGCCACCGCTCCTGAAAACATTTCTATAGTAACAGTGATTTGATTTTAATATTGTACATGATCTGTTAGTTGGACCTTCCCTATtgcataataatatatttttcagcAACTGACTGGACTGGGTGGATATAAGTTTGAGTGCTGCGAGTTACATTTCATATGAGAGATTTTAAATGACTCAACTCCTAGTTTCTAAACATCCTTGTCCAGCTCATGTTTTCCATTCTTCAGAAGTGGATGATTAGTAAAGCAGGTGAATGGCTGATTCCTGCTTGCATTCTTACAGTCACTGAGTCACTAGTAGGAGTGAAGTTCCTGTCTGCTTGTGTGCTCTTTTGTCTTCAATGGATTCTTTGTCTGCTTTTTTTATAGCTTGAGTCATTCTTAAAGTTTGGTGTTCCTTAAACTTAATTAACTAGTGAAATAATTGATGAAAGCAGACTGATAGAttttgatagattttttttgctgtcaTAAGTAGGTCAGAACAGGTTGTATTGTTcagtgggtgtgggtgtgtgtgttctgtgtatatatatgacgtacagagagaggggggggaaCAGAGGGAGctgttttgcttgtttctgaAGTTCATGTGAAGTGAGGCACTTAGCTCATGGGTGGGTGAAGCAATATAGTGCGGGCATCTGTTCCTCTCAACATAATAGATGCATGCACAGTTTGATAATTTATTACGAATACTGAGAGATTGTCTGTCTCAGAAAAGAAGCAGTTATTAATTGTAGTGTACATTTCTACTTTTGCAACTTGAATATTTATTCTGTATCAAATTATGCATTGATTCCAGCACTGTAAATAGTATGTCTGTTAGAAGTGTTAAAACAGTTTACAACAGATATTGGTTAGCATCAATGTTCACAAAGTATGCCCCATATGTTTTTTCAAAACCTTATTTAAGTAAGTATGGCTGATCTGGTCaaaaacaatatcacaatattatatataggcAATATTATATCTATTAAACATATTGTTACAGTTTGTTATTAATTAGCACCTAGGTTCTCTTGATAGGCCACATATGTTTTCAAAACCTAATTGGAAAGTAGGCCTtaataatattgccaaaaatTACATCACAAATCAGTTTTATTAATTCTGGTTGATTCAATATATTTCCGATATGGATATGAACAATACACACAGACATAGCCAGGTTACTGTCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU46556 True 2809 lncRNA 0.42 2 5739614 5742444

Neighbor

gene id symbol gene type direction distance location
cpn1 cpn1,LOC107722209,LOC107684044,LOC107702463 coding upstream 55451 5669067 ~ 5684163 (+)
LOC103038312 NA coding upstream 85937 5642317 ~ 5653677 (+)
gpam gpam,LOC107702461,LOC107755524,LOC107566297,LOC107581571,LOC107722223 coding upstream 97819 5615695 ~ 5641795 (+)
LOC103039360 LOC108426428 coding upstream 132223 5596081 ~ 5607391 (+)
zdhhc6 zdhhc6,LOC107684040,LOC107722226,LOC107755527,LOC107702458 coding upstream 160172 5573465 ~ 5579442 (+)
LOC107197899 NA coding downstream 15628 5758072 ~ 5764882 (+)
LOC103045303 NA coding downstream 23412 5765856 ~ 5771877 (+)
casp7 casp7 coding downstream 64718 5807162 ~ 5819997 (+)
LOC107197901 NA coding downstream 81944 5824388 ~ 5828009 (+)
plekhs1 NA coding downstream 87190 5829634 ~ 5841843 (+)
G34606 NA non-coding upstream 79712 5659266 ~ 5659902 (+)
G34605 NA non-coding upstream 80415 5658969 ~ 5659199 (+)
G34587 vti1a,LOC107566351,LOC107702459 non-coding upstream 167933 5400955 ~ 5571681 (+)
G34580 NA non-coding upstream 353436 5385883 ~ 5386178 (+)
LOC111192354 NA non-coding upstream 440593 5209468 ~ 5299021 (+)
G34602 NA non-coding downstream 46314 5788758 ~ 5793818 (+)
G34636 dclre1a non-coding downstream 102458 5844902 ~ 5847925 (+)
G34644 ccdc186,LOC107755417,LOC107566113 non-coding downstream 171797 5914241 ~ 5916402 (+)
G34657 NA non-coding downstream 224244 5966688 ~ 5967194 (+)
G34790 NA non-coding downstream 300402 6042846 ~ 6043340 (+)
LOC103025551 sema4g other upstream 814848 4882556 ~ 4924766 (+)
G34309 NA other upstream 1561531 4171051 ~ 4178083 (+)
tbkbp1 tbkbp1,LOC107565677,LOC107754096,LOC107677885,LOC107743771 other upstream 2080482 3564030 ~ 3659132 (+)
amz2 amz2 other upstream 3682651 2050742 ~ 2056963 (+)
LOC111192342 dnah9 other upstream 4351595 1369173 ~ 1388019 (+)
LOC103045604 LOC108426437,LOC107683136 other downstream 504202 6246646 ~ 6258050 (+)
slc38a10 slc38a10,LOC102792191,LOC107749860 other downstream 759701 6502145 ~ 6541460 (+)
LOC103029551 qki2,LOC103029551,LOC108426533,LOC107684089,LOC108274051,LOC107749853,LOC107755469 other downstream 850163 6592607 ~ 6663607 (+)
G34931 NA other downstream 988510 6730954 ~ 6731424 (+)
G35021 NA other downstream 1159973 6902417 ~ 6903997 (+)

Expression


Co-expression Network