G34688 (zdhhc6,LOC107684040,LOC107722226,LOC107581631)


Basic Information

Item Value
gene id G34688
gene name zdhhc6,LOC107684040,LOC107722226,LOC107581631
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 5573473 ~ 5574758 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU46673
GTTTCCACTCTAGAGGAATATATCCAGGGCCCACAAACATGGCATTGAAGTAGTTGTAGAGAATCAGGACCGTCCAGTTGATGAGCATAATGAAGTTAATGCTGCCGCCTGTGGTGTCCAAGGGCCAGTACCAGATAATTGAGTCCAGCATGGCCATGGATGAGCACACAGCAATGACAGTAAGTGCAATGATCGGACCCCAGTGACAGAGCCGCCTAACCTCATGGAGGTTTTCGAATACGATAATGGCTGAGAGGATGTTCATTGTGtagctttttttcccccaaaagttCCTTGAAGCAATAAAAAATTCAATGTAGATTTAGAtgtgctgtctctctctaatggaatgcattaaaaatgaggAAAACAAAAGATGGATTTTCTGTCTTCTCCGAAACATCCAGCAGTCAGCTGTGTCTGGAGTCACAGGAGCCGTCTGTGTTTTACAGTCGTAGGCTCTCCTAGTGCGTGGCATTCTTTCTCTCTGGTCACCTGATAGCTTTACTCTCCAACTAGAAGCAGGTCATCCATCTCGTCTCGCTACTTCCTACTGTTTTCTGCTCTCCCCCCATCCAgtgttgccaggtccaacaaaatatcCCACCC

Function

symbol description
zdhhc6 Predicted to enable protein-cysteine S-palmitoyltransferase activity. Predicted to be involved in peptidyl-L-cysteine S-palmitoylation and protein targeting to membrane. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus and endoplasmic reticulum. Orthologous to human ZDHHC6 (zinc finger DHHC-type palmitoyltransferase 6).

NR:

description
palmitoyltransferase ZDHHC6

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU46673 True 609 lncRNA 0.46 2 5573473 5574758

Neighbor

gene id symbol gene type direction distance location
vti1a vti1a,LOC107566351,LOC107702459 coding downstream 1839 5400928 ~ 5571634 (-)
LOC103030716 crygmxl2,LOC103030716,LOC108426411,LOC106516994,LOC104933141,LOC103368160,LOC107581669,LOC107702435 coding downstream 407848 5163950 ~ 5165625 (-)
LOC103029658 crygmx,LOC103029658,LOC108426431,LOC107684144,LOC107566847,LOC107755411,LOC107581668 coding downstream 410007 5160908 ~ 5163466 (-)
entpd1 NA coding downstream 448275 5099968 ~ 5125198 (-)
mrpl43 mrpl43,LOC107722220,LOC107581592,LOC107565786 coding downstream 642766 4927516 ~ 4930707 (-)
acsl5 acsl5,LOC107702457,LOC107755526,LOC107566323,LOC107581566,LOC107722228,LOC107684041 coding upstream 4572 5579330 ~ 5596438 (-)
tectb tectb,LOC107755437,LOC107566341,LOC107702437,LOC107722201 coding upstream 25610 5600368 ~ 5687159 (-)
nrap nrap,LOC107755535 coding upstream 196861 5771619 ~ 5803122 (-)
LOC103041412 LOC103041412,LOC108426492 coding upstream 243964 5818722 ~ 5822431 (-)
dclre1a NA coding upstream 268220 5842978 ~ 5852808 (-)
G34682 NA non-coding downstream 182153 5391095 ~ 5391320 (-)
G34556 NA non-coding downstream 379614 5191033 ~ 5193859 (-)
G34543 aldh18a1,LOC107707764 non-coding downstream 421060 5151372 ~ 5152413 (-)
G34544 aldh18a1,LOC107684039 non-coding downstream 422510 5150310 ~ 5150963 (-)
G34542 NA non-coding downstream 429417 5143724 ~ 5144056 (-)
G34708 NA non-coding upstream 70148 5644906 ~ 5645105 (-)
G34713 NA non-coding upstream 84266 5659024 ~ 5659904 (-)
G34719 cpn1,LOC107722209,LOC107684044 non-coding upstream 102660 5677418 ~ 5681939 (-)
G34760 nhlrc2 non-coding upstream 287699 5862457 ~ 5867932 (-)
G34765 adrb1 non-coding upstream 312280 5887038 ~ 5891991 (-)
tcf7l2 tcf7l2,LOC107755529,LOC107566231,LOC106949585 other downstream 210987 5255619 ~ 5362486 (-)
psme4 psme4,psme4b,LOC108426507,LOC107584369,LOC107749369 other downstream 577560 4971698 ~ 4995913 (-)
G34214 NA other downstream 1690004 3836621 ~ 3883469 (-)
prr15l prr15l other downstream 1784281 3783125 ~ 3789192 (-)
G34046 NA other downstream 2379096 3181168 ~ 3194377 (-)
ccdc186 ccdc186,LOC107755417,LOC107689962 other upstream 328830 5903588 ~ 5928154 (-)
G34770 NA other upstream 361077 5935835 ~ 5939400 (-)
ablim1 ablim1 other upstream 474243 6049001 ~ 6147311 (-)
LOC103026268 bahcc1 other upstream 791926 6366684 ~ 6513701 (-)
G34953 NA other upstream 962263 6537021 ~ 6541364 (-)

Expression


Co-expression Network