G34719 (cpn1,LOC107722209,LOC107684044)


Basic Information

Item Value
gene id G34719
gene name cpn1,LOC107722209,LOC107684044
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 5677418 ~ 5681939 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU46707
CTGAGATTTCTGCATTGCCGATGGGGTTGTTGTTCTCATCATAGACCATTCCTTTAATGCCGTGGTGTACCTGTTCCATGTAGGACACCAGAGCCTCCCTGTTGGCTAGCCACTCCCTGGATAGAGCACTTGCTGGGGGGAACTTATCACAGCTCAGCTCCAGAGTGATCTCAAAGCAGTTAGTGTAGAGGTAGTTAAAGTCCTGCATGCCTTTGGACAAAGAGTACCAGTTGGCTCCATTGGTAATGCCCTCCTCAAAGTAGTCTCCACAATTCCAGCCTTTATGCATCCAACTGTGAGCATATGAGTAGGCTTTTGCCAaCTTTTTAAAGATCTTGTCATCGGGGGTGGCTGAATATGTAGACTTTCCTCTAATACGAGCCTCT

Function

symbol description
cpn1 Predicted to enable metallocarboxypeptidase activity. Acts upstream of or within cellular response to estrogen stimulus; liver development; and sprouting angiogenesis. Predicted to be active in extracellular space. Is expressed in several structures, including digestive system; mesoderm; nervous system; pectoral fin cartilage; and vasculature. Human ortholog(s) of this gene implicated in carboxypeptidase N deficiency. Orthologous to human CPN1 (carboxypeptidase N subunit 1).

NR:

description
carboxypeptidase N catalytic chain

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU46707 True 386 lncRNA 0.30 4 5677418 5681939

Neighbor

gene id symbol gene type direction distance location
acsl5 acsl5,LOC107702457,LOC107755526,LOC107566323,LOC107581566,LOC107722228,LOC107684041 coding downstream 80980 5579330 ~ 5596438 (-)
vti1a vti1a,LOC107566351,LOC107702459 coding downstream 105784 5400928 ~ 5571634 (-)
LOC103030716 crygmxl2,LOC103030716,LOC108426411,LOC106516994,LOC104933141,LOC103368160,LOC107581669,LOC107702435 coding downstream 511793 5163950 ~ 5165625 (-)
LOC103029658 crygmx,LOC103029658,LOC108426431,LOC107684144,LOC107566847,LOC107755411,LOC107581668 coding downstream 513952 5160908 ~ 5163466 (-)
entpd1 NA coding downstream 552220 5099968 ~ 5125198 (-)
nrap nrap,LOC107755535 coding upstream 89680 5771619 ~ 5803122 (-)
LOC103041412 LOC103041412,LOC108426492 coding upstream 136783 5818722 ~ 5822431 (-)
dclre1a NA coding upstream 161039 5842978 ~ 5852808 (-)
LOC103043680 NA coding upstream 246622 5928561 ~ 5934694 (-)
afap1l2 afap1l2 coding upstream 299050 5980989 ~ 6038592 (-)
G34713 NA non-coding downstream 17514 5659024 ~ 5659904 (-)
G34708 NA non-coding downstream 32313 5644906 ~ 5645105 (-)
G34688 zdhhc6,LOC107684040,LOC107722226,LOC107581631 non-coding downstream 102660 5573473 ~ 5574758 (-)
G34682 NA non-coding downstream 286098 5391095 ~ 5391320 (-)
G34556 NA non-coding downstream 483559 5191033 ~ 5193859 (-)
G34760 nhlrc2 non-coding upstream 180518 5862457 ~ 5867932 (-)
G34765 adrb1 non-coding upstream 205099 5887038 ~ 5891991 (-)
G34769 NA non-coding upstream 245750 5927689 ~ 6012669 (-)
G34791 NA non-coding upstream 360986 6042925 ~ 6043439 (-)
G34829 trub1,LOC107755443,LOC107702428 non-coding upstream 467291 6149230 ~ 6152861 (-)
tcf7l2 tcf7l2,LOC107755529,LOC107566231,LOC106949585 other downstream 314932 5255619 ~ 5362486 (-)
psme4 psme4,psme4b,LOC108426507,LOC107584369,LOC107749369 other downstream 681505 4971698 ~ 4995913 (-)
G34214 NA other downstream 1793949 3836621 ~ 3883469 (-)
prr15l prr15l other downstream 1888226 3783125 ~ 3789192 (-)
G34046 NA other downstream 2483041 3181168 ~ 3194377 (-)
ccdc186 ccdc186,LOC107755417,LOC107689962 other upstream 221649 5903588 ~ 5928154 (-)
G34770 NA other upstream 253896 5935835 ~ 5939400 (-)
ablim1 ablim1 other upstream 367062 6049001 ~ 6147311 (-)
LOC103026268 bahcc1 other upstream 684745 6366684 ~ 6513701 (-)
G34953 NA other upstream 855082 6537021 ~ 6541364 (-)

Expression


Co-expression Network