G34760 (nhlrc2)


Basic Information

Item Value
gene id G34760
gene name nhlrc2
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 5862457 ~ 5867932 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU46759
GTCCCTCTCGCCTCCCACCACGTGCTTGACTGCCCCGTCGCTCAGGGACACGCTGCGGATGGTGCTGCTCTCACTGTCTGCGATGAACAGGCAGTTCCAGGGCTGGATGGGGACAAGAGCCAGAGCTGAGGGCTGAGCCAGACCAGCCTTATGAGGGTACGAATTATTCCTGTTCTCCTCATTCCCACTGCCTGCAAACCGCACACACACTCCCTTCCCGTACTCACTTCCTTTGGGCAGCTTCCCATCCTCCAGGAACACAGCCCAGATTTGATGAGTCCCTGCCATGGCGATCCACAACACGTTATCCTCTACACCACCTGTAGTGCCGAGGGCTACATCCCAGGGggagctgattggctgctgcggCCCCATTGCCCCACCCTCCTTGTCTGTGCCTTGGAGTCCAGTACCAGCTAAAGTAGTGACTCTTCCCTCTGAAAGGTCAATcctcCTGATCAGATGGTTCTCTGTGTCGGCCACAAACACAGTGTCTCCCTTTATGAATACTCCTTGAGGAGAATTGAACAGTGCCTCAGACAAGTTCCCATCCTTCCAGCCACTTCCAGAacCTCCTATACAGTAAAGAACTTTTCCAGTACTGGAGACCACCAAAATCCTATGGTGTCCTGTATCCGCAATGGCCAGCTTCTTGCTGAAGGGATCCACTGCTACCTTTCCAGGGAAGGAGAGGATGGAAGGAGGTAAGGAGTCTCTGAAGAGCTTCAATCCCACAGCATGGTCCCTCAGAAGGCCTTGCTCTCCATAGTGCTTTAGAGCGACGGAGGTAAACAGGAAAAGCCTGTCTCTGTGTTCTTCACCCACCACAGAAAACAGCAATTTCCTCTGGGGCCCAGGATCACCAAGGTGGGCCAGCAAGCCACCTCCAACTCCTGCCATAGCCGCGCATCACTATCATTCACTACAGGGTGCGTGATGCTGTACCTTAGCACTGCAGAGCAAATGTTCTGTAGAACCTTTTCATTGGGGAACTTGGCTGAGTGAACACCGACCACGAC

Function

symbol description
nhlrc2 Orthologous to human NHLRC2 (NHL repeat containing 2).

NR:

description
PREDICTED: NHL repeat-containing protein 2 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU46759 True 1019 lncRNA 0.28 5 5862457 5867932

Neighbor

gene id symbol gene type direction distance location
dclre1a NA coding downstream 9649 5842978 ~ 5852808 (-)
LOC103041412 LOC103041412,LOC108426492 coding downstream 40026 5818722 ~ 5822431 (-)
nrap nrap,LOC107755535 coding downstream 59335 5771619 ~ 5803122 (-)
tectb tectb,LOC107755437,LOC107566341,LOC107702437,LOC107722201 coding downstream 175298 5600368 ~ 5687159 (-)
acsl5 acsl5,LOC107702457,LOC107755526,LOC107566323,LOC107581566,LOC107722228,LOC107684041 coding downstream 266019 5579330 ~ 5596438 (-)
LOC103043680 NA coding upstream 60629 5928561 ~ 5934694 (-)
afap1l2 afap1l2 coding upstream 113057 5980989 ~ 6038592 (-)
pgs1 pgs1,LOC107690911,LOC107755482,LOC107722233,LOC107601408 coding upstream 285762 6153694 ~ 6178101 (-)
tmem235 tmem235 coding upstream 388472 6256404 ~ 6266677 (-)
birc5 birc5,birc5a,LOC107684154,LOC107581679,LOC107722191,LOC108273465 coding upstream 400469 6268401 ~ 6270943 (-)
G34719 cpn1,LOC107722209,LOC107684044 non-coding downstream 180518 5677418 ~ 5681939 (-)
G34713 NA non-coding downstream 202553 5659024 ~ 5659904 (-)
G34708 NA non-coding downstream 217352 5644906 ~ 5645105 (-)
G34688 zdhhc6,LOC107684040,LOC107722226,LOC107581631 non-coding downstream 287699 5573473 ~ 5574758 (-)
G34682 NA non-coding downstream 471137 5391095 ~ 5391320 (-)
G34765 adrb1 non-coding upstream 19106 5887038 ~ 5891991 (-)
G34769 NA non-coding upstream 59757 5927689 ~ 6012669 (-)
G34791 NA non-coding upstream 174993 6042925 ~ 6043439 (-)
G34829 trub1,LOC107755443,LOC107702428 non-coding upstream 281298 6149230 ~ 6152861 (-)
G34939 NA non-coding upstream 491979 6359911 ~ 6360378 (-)
tcf7l2 tcf7l2,LOC107755529,LOC107566231,LOC106949585 other downstream 499971 5255619 ~ 5362486 (-)
psme4 psme4,psme4b,LOC108426507,LOC107584369,LOC107749369 other downstream 866544 4971698 ~ 4995913 (-)
G34214 NA other downstream 1978988 3836621 ~ 3883469 (-)
prr15l prr15l other downstream 2073265 3783125 ~ 3789192 (-)
G34046 NA other downstream 2668080 3181168 ~ 3194377 (-)
ccdc186 ccdc186,LOC107755417,LOC107689962 other upstream 35656 5903588 ~ 5928154 (-)
G34770 NA other upstream 67903 5935835 ~ 5939400 (-)
ablim1 ablim1 other upstream 181069 6049001 ~ 6147311 (-)
LOC103026268 bahcc1 other upstream 498752 6366684 ~ 6513701 (-)
G34953 NA other upstream 669089 6537021 ~ 6541364 (-)

Expression


Co-expression Network