G34790


Basic Information

Item Value
gene id G34790
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 6042846 ~ 6043340 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU46808
CTTTTACTAGTGACTGGTTTCAGATGACCTAAGCTGGTCTTAAAGGGTGACTGAAAACTTGGTCTTTCATATCAAAAAAATACCTGTGTTGGTAAATAAGCTGATGGAGTAACTGACCACTTGCCCGGCACAGCATATCGTTTCAtttgtacggtggccgagaaagcccagcgcagtgcaaattgaaaagcgctgcaaaagcacaaaacacatccatcaaaactacaacacaggcgcagcaaaaagaaaaacgcgctgcaaatagaaaaacgcgctgcaaatagaaccacaacacaacggaagtgagtcacaacacaatggaattttcccgggggaccttaaaagatgctgtaccagctgtatacaaaggacaataagtggcaaacaagcttctgaaaagtaagttatgtttattacctgtgattaccacggttgtgtgcatattattaaaagttctgcttcacaaaacgccttgtttgccacttattgtccttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU46808 True 495 lncRNA 0.39 1 6042846 6043340

Neighbor

gene id symbol gene type direction distance location
LOC111192358 LOC108426481 coding upstream 40316 6000006 ~ 6002530 (+)
vwa2 vwa2 coding upstream 61629 5949544 ~ 5981217 (+)
tdrd1 NA coding upstream 94217 5904106 ~ 5948629 (+)
adrb1 adrb1 coding upstream 150855 5887044 ~ 5891991 (+)
nhlrc2 nhlrc2 coding upstream 167632 5852907 ~ 5875214 (+)
trub1 trub1,LOC107755443,LOC107702428 coding downstream 105947 6149287 ~ 6152869 (+)
LOC103024806 LOC108426520,LOC108274104,LOC107601442,LOC107755481,LOC107581599,LOC107690914,LOC107684082,LOC107722230 coding downstream 137484 6180824 ~ 6185239 (+)
tepsin tepsin,LOC105892758 coding downstream 504210 6547550 ~ 6553218 (+)
LOC103028092 LOC108273792 coding downstream 517520 6560860 ~ 6567106 (+)
tbcc NA coding downstream 536558 6579898 ~ 6581259 (+)
G34657 NA non-coding upstream 75652 5966688 ~ 5967194 (+)
G34644 ccdc186,LOC107755417,LOC107566113 non-coding upstream 126444 5914241 ~ 5916402 (+)
G34636 dclre1a non-coding upstream 194921 5844902 ~ 5847925 (+)
G34602 NA non-coding upstream 249028 5788758 ~ 5793818 (+)
G34615 NA non-coding upstream 300402 5739614 ~ 5742444 (+)
G34841 tmem235 non-coding downstream 215213 6258553 ~ 6258814 (+)
G34842 NA non-coding downstream 222969 6266309 ~ 6266668 (+)
G34837 birc5,birc5a,LOC107684154,LOC107581679,LOC107722191,LOC108273465 non-coding downstream 225088 6268428 ~ 6270954 (+)
G34855 fscn2,LOC107581600,LOC107722237,LOC107684083 non-coding downstream 242209 6285549 ~ 6287415 (+)
LOC111192359 NA non-coding downstream 249459 6292799 ~ 6296716 (+)
dnmbp dnmbp,LOC107722208,LOC107684043 other upstream 286730 5692522 ~ 5756116 (+)
LOC103025551 sema4g other upstream 1118080 4882556 ~ 4924766 (+)
G34309 NA other upstream 1864763 4171051 ~ 4178083 (+)
tbkbp1 tbkbp1,LOC107565677,LOC107754096,LOC107677885,LOC107743771 other upstream 2383714 3564030 ~ 3659132 (+)
amz2 amz2 other upstream 3985883 2050742 ~ 2056963 (+)
LOC103045604 LOC108426437,LOC107683136 other downstream 203306 6246646 ~ 6258050 (+)
slc38a10 slc38a10,LOC102792191,LOC107749860 other downstream 458805 6502145 ~ 6541460 (+)
LOC103029551 qki2,LOC103029551,LOC108426533,LOC107684089,LOC108274051,LOC107749853,LOC107755469 other downstream 549267 6592607 ~ 6663607 (+)
G34931 NA other downstream 687614 6730954 ~ 6731424 (+)
G35021 NA other downstream 859077 6902417 ~ 6903997 (+)

Expression


Co-expression Network