G34791


Basic Information

Item Value
gene id G34791
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 6042925 ~ 6043439 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU46809
gtgagtcacaacacaacagaattttcccgggggaccttaaaagatactgtaccagctaagctgcgtcttcagtaacgtctcggacttcaatatgtgtacaaaggacaataagtggcaaacaaggcgttttgtgaagcagaacttttaataatatgcacacaaccgtggtaatcacaggtaataaacataacttacttttcagaagcttgtttgccacttattgtcctttgtatacagctggtacagcatcttttaaggtcccccgggaaaattccattgtgttgtgactcacttccgttgtgttgtggttctatttgcagcgcgtttttctatttgcagcgcgtttttctttttgctgcgcctgtgttgtagttttgatggatgtgttttgtgcttttgcagcgcttttcaatttgcactgcgctgggctttctcggccaccgtacaaaTGAAACGATATGCTGTGCCGGGCAAGTGGTCAGTTACTCCATCAGCTTATTTACCAACACAGGTAT

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0021532 neural tube patterning biological_process
GO:0007275 multicellular organism development biological_process
GO:0021903 rostrocaudal neural tube patterning biological_process
GO:0048856 anatomical structure development biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0007389 pattern specification process biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0030917 midbrain-hindbrain boundary development biological_process
GO:0009790 embryo development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU46809 True 515 lncRNA 0.43 1 6042925 6043439

Neighbor

gene id symbol gene type direction distance location
afap1l2 afap1l2 coding downstream 4333 5980989 ~ 6038592 (-)
LOC103043680 NA coding downstream 108231 5928561 ~ 5934694 (-)
dclre1a NA coding downstream 190117 5842978 ~ 5852808 (-)
LOC103041412 LOC103041412,LOC108426492 coding downstream 220494 5818722 ~ 5822431 (-)
nrap nrap,LOC107755535 coding downstream 239803 5771619 ~ 5803122 (-)
pgs1 pgs1,LOC107690911,LOC107755482,LOC107722233,LOC107601408 coding upstream 110255 6153694 ~ 6178101 (-)
tmem235 tmem235 coding upstream 212965 6256404 ~ 6266677 (-)
birc5 birc5,birc5a,LOC107684154,LOC107581679,LOC107722191,LOC108273465 coding upstream 224962 6268401 ~ 6270943 (-)
LOC103025956 fscn2,LOC107684083,LOC107722237,LOC107581600 coding upstream 230432 6273871 ~ 6287633 (-)
LOC103027554 NA coding upstream 509894 6553333 ~ 6558835 (-)
G34769 NA non-coding downstream 30256 5927689 ~ 6012669 (-)
G34765 adrb1 non-coding downstream 150934 5887038 ~ 5891991 (-)
G34760 nhlrc2 non-coding downstream 174993 5862457 ~ 5867932 (-)
G34719 cpn1,LOC107722209,LOC107684044 non-coding downstream 360986 5677418 ~ 5681939 (-)
G34713 NA non-coding downstream 383021 5659024 ~ 5659904 (-)
G34829 trub1,LOC107755443,LOC107702428 non-coding upstream 105791 6149230 ~ 6152861 (-)
G34939 NA non-coding upstream 316472 6359911 ~ 6360378 (-)
G34987 timm23a,timm23,LOC103030206,LOC108426535,LOC107690962,LOC107561858,LOC107684090 non-coding upstream 632140 6675579 ~ 6679954 (-)
G34988 NA non-coding upstream 636912 6680351 ~ 6680909 (-)
G34997 NA non-coding upstream 685422 6728861 ~ 6729154 (-)
G34770 NA other downstream 103525 5935835 ~ 5939400 (-)
ccdc186 ccdc186,LOC107755417,LOC107689962 other downstream 114771 5903588 ~ 5928154 (-)
tcf7l2 tcf7l2,LOC107755529,LOC107566231,LOC106949585 other downstream 680439 5255619 ~ 5362486 (-)
psme4 psme4,psme4b,LOC108426507,LOC107584369,LOC107749369 other downstream 1047012 4971698 ~ 4995913 (-)
G34214 NA other downstream 2159456 3836621 ~ 3883469 (-)
ablim1 ablim1 other upstream 5562 6049001 ~ 6147311 (-)
LOC103026268 bahcc1 other upstream 323245 6366684 ~ 6513701 (-)
G34953 NA other upstream 493582 6537021 ~ 6541364 (-)
ndufaf8 NA other upstream 499705 6543144 ~ 6546582 (-)
G34981 qki2,LOC103029551,LOC108426533 other upstream 576241 6619680 ~ 6653585 (-)

Expression


Co-expression Network