Item | Value |
---|---|
gene id | ablim1 |
gene name | ablim1 |
gene type | misc |
species | mexican tetra (Astyanax mexicanus) |
category of species | ornamental fish |
Item | Value |
---|---|
chromosome id | NC_035900.1 |
NCBI id | CM008303.1 |
chromosome length | 25652880 |
location | 6049001 ~ 6147311 (-) |
genome version | Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome |
symbol | description |
---|---|
ablim1 | Predicted to enable actin filament binding activity. Acts upstream of or within cilium assembly and lamellipodium assembly. Located in lamellipodium and stress fiber. |
id | description |
---|---|
K07520 | ABLIM; actin-binding LIM protein |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
TU46833 | False | 1855 | lncRNA | 0.43 | 3 | 6049006 | 6052438 |
XM_007259274.3 | False | 4239 | mRNA | 0.50 | 28 | 6049001 | 6121676 |
XM_007259275.3 | False | 4223 | mRNA | 0.50 | 27 | 6049001 | 6121675 |
XM_007259280.3 | False | 4100 | mRNA | 0.49 | 27 | 6049001 | 6121678 |
XM_007259283.3 | False | 4036 | mRNA | 0.49 | 25 | 6049001 | 6121674 |
XM_007259289.3 | False | 3897 | mRNA | 0.49 | 24 | 6049001 | 6121676 |
XM_015608368.2 | False | 4246 | mRNA | 0.50 | 28 | 6049001 | 6121677 |
XM_015608369.2 | False | 4230 | mRNA | 0.50 | 27 | 6049001 | 6121676 |
XM_015608370.2 | False | 4211 | mRNA | 0.49 | 27 | 6049001 | 6121678 |
XM_015608371.2 | False | 4173 | mRNA | 0.50 | 27 | 6049001 | 6121679 |
XM_015608372.2 | False | 4137 | mRNA | 0.50 | 26 | 6049001 | 6121676 |
XM_015608373.2 | False | 4118 | mRNA | 0.49 | 27 | 6049001 | 6121675 |
XM_015608374.2 | False | 4043 | mRNA | 0.49 | 25 | 6049001 | 6121675 |
XM_015608375.2 | False | 4165 | mRNA | 0.49 | 28 | 6049001 | 6115430 |
XM_015608376.2 | True | 4733 | mRNA | 0.48 | 28 | 6049001 | 6147311 |
XM_015608377.2 | False | 2572 | mRNA | 0.55 | 27 | 6050568 | 6121680 |
XM_022668976.1 | False | 4202 | mRNA | 0.50 | 27 | 6049001 | 6121678 |
XM_022668977.1 | False | 4197 | mRNA | 0.50 | 27 | 6049001 | 6121679 |
XM_022668978.1 | False | 4197 | mRNA | 0.50 | 27 | 6049001 | 6121679 |
XM_022668979.1 | False | 4168 | mRNA | 0.49 | 26 | 6049001 | 6121680 |
XM_022668980.1 | False | 4152 | mRNA | 0.49 | 27 | 6049001 | 6121676 |
XM_022668981.1 | False | 4153 | mRNA | 0.49 | 27 | 6049001 | 6121677 |
XM_022668982.1 | False | 4152 | mRNA | 0.50 | 26 | 6049001 | 6121679 |
XM_022668983.1 | False | 4145 | mRNA | 0.49 | 27 | 6049001 | 6121675 |
XM_022668984.1 | False | 4137 | mRNA | 0.49 | 26 | 6049001 | 6121676 |
XM_022668985.1 | False | 4130 | mRNA | 0.49 | 26 | 6049001 | 6121675 |
XM_022668986.1 | False | 4089 | mRNA | 0.50 | 25 | 6049001 | 6121679 |
XM_022668987.1 | False | 4084 | mRNA | 0.49 | 26 | 6049001 | 6121677 |
XM_022668988.1 | False | 2647 | mRNA | 0.54 | 28 | 6050568 | 6121680 |
XM_022668989.1 | False | 4059 | mRNA | 0.49 | 26 | 6049001 | 6121676 |
XM_022668990.1 | False | 4044 | mRNA | 0.49 | 24 | 6049001 | 6121679 |
XM_022668991.1 | False | 4036 | mRNA | 0.50 | 24 | 6049001 | 6121677 |
XM_022668992.1 | False | 4024 | mRNA | 0.49 | 25 | 6049001 | 6121677 |
XM_022668993.1 | False | 4006 | mRNA | 0.49 | 26 | 6049001 | 6121677 |
XM_022668994.1 | False | 3991 | mRNA | 0.49 | 25 | 6049001 | 6121677 |
XM_022668995.1 | False | 3994 | mRNA | 0.49 | 25 | 6049001 | 6121680 |
XM_022668996.1 | False | 3962 | mRNA | 0.49 | 24 | 6049001 | 6121678 |
XM_022668997.1 | False | 3942 | mRNA | 0.49 | 23 | 6049001 | 6121676 |
XM_022668998.1 | False | 3916 | mRNA | 0.49 | 23 | 6049001 | 6121677 |
XM_022668999.1 | False | 3913 | mRNA | 0.49 | 25 | 6049001 | 6121677 |
XM_022669000.1 | False | 3909 | mRNA | 0.49 | 23 | 6049001 | 6121676 |
XM_022669001.1 | False | 3898 | mRNA | 0.49 | 23 | 6049001 | 6121680 |
XM_022669002.1 | False | 3821 | mRNA | 0.49 | 22 | 6049001 | 6121675 |
XM_022669003.1 | False | 3814 | mRNA | 0.49 | 22 | 6049001 | 6121674 |
XM_022669004.1 | False | 3803 | mRNA | 0.49 | 22 | 6049001 | 6121678 |
XM_022669005.1 | False | 3770 | mRNA | 0.49 | 22 | 6049001 | 6121678 |
XM_022669006.1 | False | 3675 | mRNA | 0.48 | 21 | 6049001 | 6121676 |
XM_022669007.1 | False | 4129 | mRNA | 0.50 | 25 | 6049001 | 6121677 |
XM_022669008.1 | False | 3862 | mRNA | 0.49 | 23 | 6049001 | 6121677 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
afap1l2 | afap1l2 | coding | downstream | 10409 | 5980989 ~ 6038592 (-) |
LOC103043680 | NA | coding | downstream | 114307 | 5928561 ~ 5934694 (-) |
dclre1a | NA | coding | downstream | 196193 | 5842978 ~ 5852808 (-) |
LOC103041412 | LOC103041412,LOC108426492 | coding | downstream | 226570 | 5818722 ~ 5822431 (-) |
nrap | nrap,LOC107755535 | coding | downstream | 245879 | 5771619 ~ 5803122 (-) |
pgs1 | pgs1,LOC107690911,LOC107755482,LOC107722233,LOC107601408 | coding | upstream | 6383 | 6153694 ~ 6178101 (-) |
tmem235 | tmem235 | coding | upstream | 109093 | 6256404 ~ 6266677 (-) |
birc5 | birc5,birc5a,LOC107684154,LOC107581679,LOC107722191,LOC108273465 | coding | upstream | 121090 | 6268401 ~ 6270943 (-) |
LOC103025956 | fscn2,LOC107684083,LOC107722237,LOC107581600 | coding | upstream | 126560 | 6273871 ~ 6287633 (-) |
LOC103027554 | NA | coding | upstream | 406022 | 6553333 ~ 6558835 (-) |
G34791 | NA | non-coding | downstream | 5562 | 6042925 ~ 6043439 (-) |
G34769 | NA | non-coding | downstream | 36332 | 5927689 ~ 6012669 (-) |
G34765 | adrb1 | non-coding | downstream | 157010 | 5887038 ~ 5891991 (-) |
G34760 | nhlrc2 | non-coding | downstream | 181069 | 5862457 ~ 5867932 (-) |
G34719 | cpn1,LOC107722209,LOC107684044 | non-coding | downstream | 367062 | 5677418 ~ 5681939 (-) |
G34829 | trub1,LOC107755443,LOC107702428 | non-coding | upstream | 1919 | 6149230 ~ 6152861 (-) |
G34939 | NA | non-coding | upstream | 212600 | 6359911 ~ 6360378 (-) |
G34987 | timm23a,timm23,LOC103030206,LOC108426535,LOC107690962,LOC107561858,LOC107684090 | non-coding | upstream | 528268 | 6675579 ~ 6679954 (-) |
G34988 | NA | non-coding | upstream | 533040 | 6680351 ~ 6680909 (-) |
G34997 | NA | non-coding | upstream | 581550 | 6728861 ~ 6729154 (-) |
G34770 | NA | other | downstream | 109601 | 5935835 ~ 5939400 (-) |
ccdc186 | ccdc186,LOC107755417,LOC107689962 | other | downstream | 120847 | 5903588 ~ 5928154 (-) |
tcf7l2 | tcf7l2,LOC107755529,LOC107566231,LOC106949585 | other | downstream | 686515 | 5255619 ~ 5362486 (-) |
psme4 | psme4,psme4b,LOC108426507,LOC107584369,LOC107749369 | other | downstream | 1053088 | 4971698 ~ 4995913 (-) |
G34214 | NA | other | downstream | 2165532 | 3836621 ~ 3883469 (-) |
LOC103026268 | bahcc1 | other | upstream | 219373 | 6366684 ~ 6513701 (-) |
G34953 | NA | other | upstream | 389710 | 6537021 ~ 6541364 (-) |
ndufaf8 | NA | other | upstream | 395833 | 6543144 ~ 6546582 (-) |
G34981 | qki2,LOC103029551,LOC108426533 | other | upstream | 472369 | 6619680 ~ 6653585 (-) |
LOC103030829 | NA | other | upstream | 540856 | 6688167 ~ 6696291 (-) |