G34829 (trub1,LOC107755443,LOC107702428)


Basic Information

Item Value
gene id G34829
gene name trub1,LOC107755443,LOC107702428
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 6149230 ~ 6152861 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU46866
AAGAGCAtctttttaatcacaaatattgATCAACCAAAATGTCACCAGCAGTCACTGATCAGAAATAATCTGAACTAATAAATAACACTTTGGATAAAGGCATCAGTCATCCGAACACTGTTCTGAACCATCAATACCATAAAGAAGCCGTGTATAACTCAGTACTTTTAGTTGCAGTAAGTGATCACTCGCTGCATAGTTACATTCCAAAATCAGCACTtaatatttgtttgtaaagcatataaaaaaggaatgatgtcacaaaaaaaaaaacagaaataaaacaaagattCAGAGTTTGTGGTCAAAGGCAAGCCATTCCCTCTGTCACTAAAGGAAGAGAGTATACTGAGATCTAAGGCTCTGCTAGCACCTCCCTCTAGTCATTGTGATCTGCACTGGAACCTTCAGCTGTGATGTGATTGTGATCTCCAGCAGAACTTTCAGAACCAGGCTGGGTGGGTTTCCtgtgtggtttgttttttttgctgttgttctGCTGAGGCGCAGGCTCTGGGCAGGGCTGTAAGGACTGGGAAATGTCCTGGAAGGTCCAGCGTTCCTCCCTCAACACATGTTCCTCCAGCGTAAACTGACCCTGCTTAGTTCTAATCAGTTCCCGAATATGAGCACACGAGGACAGAGCTTTTCCCAGATCATCCACCAGGCTTCTGACATAAAACCCTCCACCACACTCGACATCTAAAGTGAATAGTGGTGGATTGAAGTCTTGTAGTGTGAGGTTGTAAACTGTTACTGGTCGTGCAGGCTTAGCCTCTACTTCTTGCCCTTgctttaataaaacagaaagaCGCTTGCCATCTTTTTTCAGTGCTGAATACAGAGGAGGGACCTGCATGATTTCCCCAGTAAACTCCTTCAGCTTTTCTTCAAAAGCCTCTCTTGTAATGTgatCATAGTTATTCTCTTGAACAACACTTCCTGTACAATCCAGAGTGTCAGTTGCTTTGCCCAGCTCTCCAACCGCAGTGTATTTCTTAGACCCAGCAAGCATTGTGGTGAGCATCTTGGTCCCTTCACCTATTCCAACCAcaaGAACACCAGAAGCATTGCTGTCTAAGGTCCCACCATGGCCAATCTTTACAGCTTGTTTCTTCCTCTTTCGACAGTTCGGATTGGCTACTCCAGCCTctttcagaagcttgtttttaAGCGTGTTTAACACATCAGCAGAGGTCGGTCCCTGTTTCTTATATATGGAGAAAATCCCGTTTAGAGAGTTTAACCTAGATAAAGAAACGCTGTTGACATTAGCCATGCTGTTCGGCAGTCAGGCGCACGAAGATGACGTACCCAAACGACGGGGTCCCTTAaattattgtgtaaaaaaaaaaaataaaaaaaaaaaactt

Function

symbol description
trub1 Predicted to enable pseudouridine synthase activity. Predicted to be involved in mRNA pseudouridine synthesis and tRNA modification. Predicted to act upstream of or within RNA processing and pseudouridine synthesis. Predicted to be active in mitochondrion. Orthologous to human TRUB1 (TruB pseudouridine synthase family member 1).

NR:

description
PREDICTED: probable tRNA pseudouridine synthase 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU46866 True 1373 lncRNA 0.32 8 6149230 6152861

Neighbor

gene id symbol gene type direction distance location
afap1l2 afap1l2 coding downstream 110638 5980989 ~ 6038592 (-)
LOC103043680 NA coding downstream 214536 5928561 ~ 5934694 (-)
dclre1a NA coding downstream 296422 5842978 ~ 5852808 (-)
LOC103041412 LOC103041412,LOC108426492 coding downstream 326799 5818722 ~ 5822431 (-)
nrap nrap,LOC107755535 coding downstream 346108 5771619 ~ 5803122 (-)
pgs1 pgs1,LOC107690911,LOC107755482,LOC107722233,LOC107601408 coding upstream 833 6153694 ~ 6178101 (-)
tmem235 tmem235 coding upstream 103543 6256404 ~ 6266677 (-)
birc5 birc5,birc5a,LOC107684154,LOC107581679,LOC107722191,LOC108273465 coding upstream 115540 6268401 ~ 6270943 (-)
LOC103025956 fscn2,LOC107684083,LOC107722237,LOC107581600 coding upstream 121010 6273871 ~ 6287633 (-)
LOC103027554 NA coding upstream 400472 6553333 ~ 6558835 (-)
G34791 NA non-coding downstream 105791 6042925 ~ 6043439 (-)
G34769 NA non-coding downstream 136561 5927689 ~ 6012669 (-)
G34765 adrb1 non-coding downstream 257239 5887038 ~ 5891991 (-)
G34760 nhlrc2 non-coding downstream 281298 5862457 ~ 5867932 (-)
G34719 cpn1,LOC107722209,LOC107684044 non-coding downstream 467291 5677418 ~ 5681939 (-)
G34939 NA non-coding upstream 207050 6359911 ~ 6360378 (-)
G34987 timm23a,timm23,LOC103030206,LOC108426535,LOC107690962,LOC107561858,LOC107684090 non-coding upstream 522718 6675579 ~ 6679954 (-)
G34988 NA non-coding upstream 527490 6680351 ~ 6680909 (-)
G34997 NA non-coding upstream 576000 6728861 ~ 6729154 (-)
G34998 NA non-coding upstream 578081 6730942 ~ 6731499 (-)
ablim1 ablim1 other downstream 1919 6049001 ~ 6147311 (-)
G34770 NA other downstream 209830 5935835 ~ 5939400 (-)
ccdc186 ccdc186,LOC107755417,LOC107689962 other downstream 221076 5903588 ~ 5928154 (-)
tcf7l2 tcf7l2,LOC107755529,LOC107566231,LOC106949585 other downstream 786744 5255619 ~ 5362486 (-)
psme4 psme4,psme4b,LOC108426507,LOC107584369,LOC107749369 other downstream 1153317 4971698 ~ 4995913 (-)
LOC103026268 bahcc1 other upstream 213823 6366684 ~ 6513701 (-)
G34953 NA other upstream 384160 6537021 ~ 6541364 (-)
ndufaf8 NA other upstream 390283 6543144 ~ 6546582 (-)
G34981 qki2,LOC103029551,LOC108426533 other upstream 466819 6619680 ~ 6653585 (-)
LOC103030829 NA other upstream 535306 6688167 ~ 6696291 (-)

Expression


Co-expression Network