LOC103045604 (LOC108426437,LOC107683136)


Basic Information

Item Value
gene id LOC103045604
gene name LOC108426437,LOC107683136
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 6246646 ~ 6258050 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU46881
atttttgtattgcaTTAAAAAGGcaactacaaaactacaatttttaattatttattgtataaagaACATCCTAGCAGATACATAAATACCTATATATTTCACAGTAGTGGCTCCTTGCTACAAAATTATTCCACCACTGCTTcagatttttataaaatgtcATAAAATCACAATTACAAACACAGCAGGGGGCTTTTACTTTGAAACAAAGGAAGCAGACAAAGCTGGGCTGTAGCTTTTTAGCCCAGGTTGCAAAAAGTTGAGTTAAAACTGCAGTTCTAACAGACAGGTTCCCAAATATTCAGTGCCTCCTTACTCAAAACTGATACTCCTAAGTTTCATGTTCAGTATACTGTACACAGACAGTACAGATTTTCAGAAGGCATGCACatctacacattttaaaagcattGCAGTATAGTTATCTGGTTATTGTGCAtcataaataaaagctaaaaacacattaagagataCAAGtataacaaatacaaataacaaacaaatataattttCTTATTGTTTGAGATTTAAAACAAGTAATTCCAATATATGCCCATTACATCAATCAGTTAAGATACCAGAAGCATGTATTtgcaaataacagaaaaataattctaTCAGATCTCTGAATCTCCAGGCATACATGATTAAGAGATTTTCAACACACTTTAGAAAGCTTTCCTGTTTTTGGAGTAATTGACTTTATCACCAGGGCTTATGTAATAGTGTCCCATAAGTGTGTAACACGCTCATTATAGAGACGGATCGTCATGACGACTAAAATGAGATTGCATTTGCTGTGCTGCAACTCCAGAGGAGGCCAGAACTGTGTGTTAGTCACAGCACATAACTCAGATCCCTCAGATCCTGAGGGCTCGTATCTGCTTTACAACATTGCAGTGAATCTGAGTTAATGATATTTTGTGTACAAATAGCCCATTGAAGTTATTGGATTGTATATTtggttttatttctaatttatccCCTGACATAAACCTTGCATTTGTGTTAACATTGATGGTCACATCAATAGTTGCCCATGGCAACAACATACCCTTTAATTCTCAACACATGTTAATGTCAGTGCTCTAAAAATAGCTTGTCACAATTACTTCATACATGTTTAAAGCTCACCTGGTGTATTATAGCAATGAGTACCCAGGTACATAATTAGCTCCTCAATAGTGCTGGACTATATTTCTTAATTAAGTTCAATATGATATAATCCCGATGtctatataaacagtataaagccACCGACTGTAGCGTATAGCTCGGCTTGAATGCAGTGAATTGATGGCAGCtcctgtaatgaacatcaggtagtgacagattctgtaaataatgtgAACCTCGTTGTATCCAAGGCCAGTTTTTTGATAGTCTGATGTTTCTTTATTCgtctaaaaataaagaatttataaaatatccTATAGGTTACTAAGAAGTAAGTATtatcaaaaattaaatatttgccaatattttaattaaaatttacttaTAAAAGTCCAATTAACATAAAAGTACCTACATGCCCTTTATTATTTGTTGTCTTTTAATTAATACTATCTGGCCTGAGGGCTCCTATTAAAAAGCCTAGAAtagtggattagctgcaatgctaactcTTTTCTGAACAGACTTGAAACTTGATTTTTGATAACAGAATAATGTCACTGTACTGGTTAGATTGAGTAGGCCCTCTCACAGAGTATGAAtttagacataaaaaaaaaaaaagtacggTACGATTTTGTGCAATGGAACCTTCACATAGAATCTGATGTTTTTCACCTTCTGTGCTCTGTAAATGAGGCAAGACACTTCACAGCATAATATCTCAAATGTCCACTCTTTCAGTTCATCCATATACGTTCTGCTCCTTTTTCTGCACTTAATTTCGAGGAAAGCTCTAGGTCAAGGTCCTTTGTGGAACATGGACAGAAAAGGATGCACCTAGACACAGTGTTGAACACCGTATaagcttttctctttttctcttatccATAAAAAAATGGACATTGTATAATGTATTCCAAGTATATTCCAAGAACTCACATTTGTCAACTGAAGAAagcattttttgtgtgttatatATTACTTAAACACAAAGCACGCAGTTACTGGAGAAGTGGCCTACAATGAATTGAAACTGAAGAGACTGATGAAATTCTTACCTCACTGGATCACTGTCACAAAATCAAGAGGATGTGTAACcatgcatttaaaaagaaattatgTATGTGACTTTTTAGATTATTGCTAGTAAAAATTTAATCCCAGTTGTCTTTAAAAATTGAAACTATTGAAATTCAGTATTAAGGAGAAAATAGAATGCAtttcaaattgttctttaaagtataaataatatGTATGTGATTTGATTGGAACAAAAATTGCTCAGGTACAGGTTTACACCC
>XM_022669011.1
ttattggtaCGCCTCTCTCGAATCGATTAATCATGCTGTACTGTTGATGCCTTGCTGTAGTCAATGATTGCCGAAAGCACAGATGCAAAGTTCAGGCAGGCTCTAAAGCGTGTGTACAGTAAATCctccacactgcagattcaGCCATGAGCTCTAACACACTCCTCCGCTCAGTCCGGGCGCTTCTGAGATGCACAAGCCGCTCTCCGGCCTCCCCCGTGGGCAGCCCAGCCCGCCGCTTCCTCAGAGCGACCCCAGTCAGGCTTTACTACAACCGAACCGGAGCGGGAGCCGCAGACACTGGCGGGTCAGTGCCGGTGCTCACGGTGGACCTCCGCAGCGACACGGTCACCAAACCCGGTCCCGCGATGCGACGAGCCATGGCCGAAGCGGAGGTGGGGGACGATGTGTTTGGAGAAGACCCCACGGTTAATGaACTGCAGAAGATGGCAACTGACATCTTTGGCATGGAGGCAGCTTTGTTCATGCCCTCAGGGACCATGAGCAATCTGATTTCAGTTATGGTGCACTGCAGGGAAAGAGGGGATGAAATGATATTAGGTGATCTGTCTCACCTGCACATATATGAGCAGGGAGGAAGTGCACAGCTTGCCGGCGTACACTCCACTACCGTCACGACTCTGCCTAATGGAACGTTTGATCTGGACCAGCTGGACTCGAAGATTCGTCATGGTTACCCTGATGCTCACTACCCCCGCTCCCGCCTGGTGTGtgtggaaaacacacacaacattctGGGTGGACGTGTGGTCCCACTCCCCTTCCTGCAGGAGctgcgTTCTTTAGCAGATCAGTATGGACTTGCGTTGCACATGGATGGGGCTAGGCTGATGAATGCAGCAGCGGCGCTGGGTGTCCATCCGTCTGTCATACTGAAACACTGTCACTCTgtcagtgtctgtctgtctaagGGACTGGGGGCGCCAGTGGGCACCATGCTTGCTGGGTCCAAAGACTTCATTCAGAGAGCAGTGCGTGCTCGGAAAGCACTGGGTGGTGGAATGCGTCAGTCAGGCATTTTGGCTGCAGCCGGTAAGATTGCCCTGTCTGACATGCCTGGTAGACTGGATGAGGACCACAGGAATGCCAGGAGCTTTGCTGAAGctCTGACACAGTGCGACCCTCCTCTGTACCAGGTGGACTTGGCTGCCATGGAAACGAACATTGTTCGATTCGTTCTGCACGACCCTGGGCTGAGTCCCACTGAGTTCTGTGAGCTGATGGGAACTGTGAGTGAGGCGGAGGTGGATGCTCTGGGTCAGGGAGTGAGTGTCCTGATGTTTCCTCATGTCGGAGGCACTGTGAGAGCTGTGTGGCATCTTGGCATTAGTGAGGAGGACACTCAGCTGGCCATAAAGAAAGCACAATTTGTGGCCCATCAGCGCAGCTTAACATCAGGAAGAGGCAGATGAAGCCACAGGACACATCTCTTCCACCTACTACACTCACTTAAACTAATAACTACAAATCTGACACCTCAGAATCCTTGATTTAGATTGACCAaggatctattttttttaactattacagcctttttattctaatttagtGCAAGCACTATTGCAGTATCATTAAGATTTTGAATagattactatttttatactgaatcTGAAAACAGTGACTCATTTTTGcactttgcacattttttaaacatacaacaATGCTCAAACTTAGTGATGcaccaaaataaaattaaacatttggccAAAGGCTGAATaccaaaagttgtttttttattatattttgaagGTTTTTCACAACTGCATAAAGTAAATaagctaaatgtatttttgtattgcaTTAAAAAGGcaactacaa

Function

GO:

id name namespace
GO:0006520 cellular amino acid metabolic process biological_process
GO:0030170 pyridoxal phosphate binding molecular_function
GO:0016829 lyase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU46881 True 2420 lncRNA 0.48 2 6255606 6258050
XM_022669011.1 False 1839 mRNA 0.50 7 6246646 6255637

Neighbor

gene id symbol gene type direction distance location
LOC103024806 LOC108426520,LOC108274104,LOC107601442,LOC107755481,LOC107581599,LOC107690914,LOC107684082,LOC107722230 coding upstream 61407 6180824 ~ 6185239 (+)
trub1 trub1,LOC107755443,LOC107702428 coding upstream 93777 6149287 ~ 6152869 (+)
LOC111192358 LOC108426481 coding upstream 244116 6000006 ~ 6002530 (+)
vwa2 vwa2 coding upstream 265429 5949544 ~ 5981217 (+)
tdrd1 NA coding upstream 298017 5904106 ~ 5948629 (+)
tepsin tepsin,LOC105892758 coding downstream 289500 6547550 ~ 6553218 (+)
LOC103028092 LOC108273792 coding downstream 302810 6560860 ~ 6567106 (+)
tbcc NA coding downstream 321848 6579898 ~ 6581259 (+)
prph2 prph2,prph2a,LOC107601435,LOC107581607,LOC107684088 coding downstream 325164 6583214 ~ 6588620 (+)
LOC103030206 timm23a,timm23,LOC103030206,LOC108426535,LOC107690962,LOC107561858,LOC107684090 coding downstream 417492 6675542 ~ 6680021 (+)
G34790 NA non-coding upstream 203306 6042846 ~ 6043340 (+)
G34657 NA non-coding upstream 279452 5966688 ~ 5967194 (+)
G34644 ccdc186,LOC107755417,LOC107566113 non-coding upstream 330244 5914241 ~ 5916402 (+)
G34636 dclre1a non-coding upstream 398721 5844902 ~ 5847925 (+)
G34602 NA non-coding upstream 452828 5788758 ~ 5793818 (+)
G34841 tmem235 non-coding downstream 503 6258553 ~ 6258814 (+)
G34842 NA non-coding downstream 8259 6266309 ~ 6266668 (+)
G34837 birc5,birc5a,LOC107684154,LOC107581679,LOC107722191,LOC108273465 non-coding downstream 10378 6268428 ~ 6270954 (+)
G34855 fscn2,LOC107581600,LOC107722237,LOC107684083 non-coding downstream 27499 6285549 ~ 6287415 (+)
LOC111192359 NA non-coding downstream 34749 6292799 ~ 6296716 (+)
dnmbp dnmbp,LOC107722208,LOC107684043 other upstream 490530 5692522 ~ 5756116 (+)
LOC103025551 sema4g other upstream 1321880 4882556 ~ 4924766 (+)
G34309 NA other upstream 2068563 4171051 ~ 4178083 (+)
tbkbp1 tbkbp1,LOC107565677,LOC107754096,LOC107677885,LOC107743771 other upstream 2587514 3564030 ~ 3659132 (+)
amz2 amz2 other upstream 4189683 2050742 ~ 2056963 (+)
slc38a10 slc38a10,LOC102792191,LOC107749860 other downstream 244095 6502145 ~ 6541460 (+)
LOC103029551 qki2,LOC103029551,LOC108426533,LOC107684089,LOC108274051,LOC107749853,LOC107755469 other downstream 334557 6592607 ~ 6663607 (+)
G34931 NA other downstream 472904 6730954 ~ 6731424 (+)
G35021 NA other downstream 644367 6902417 ~ 6903997 (+)
fasn fasn other downstream 2128123 8386173 ~ 8438865 (+)

Expression


Co-expression Network