G34939


Basic Information

Item Value
gene id G34939
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 6359911 ~ 6360378 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU47029
ttctaaagttaagctaactgagtcacaagctgtattttattaaacacacagtgggtttaatttatgttttgattcagagaagagtctttttaaccagctatcagaaacaatctcatcacagtttacatggttaattacctttcttttagaaaaatctccgtatatccagattagttttaacgacagctgctccgactagctgcctgaactcacagcgaggggaggggcggggcttcccgcacactaaactgcgctccgcaaaaccagctaactgattggctgtttctcctgaaaggcgggactttctccttgaaccggcaccacgattggttaagagacacacagcggtcagtgcattgtcgcctgtggcctatatattttttaatttagtataatacgggaaatttacgggaaaatactaatacgggaggacggcgggaaagaggagtaaaatacggtagtttcccg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU47029 True 468 lncRNA 0.43 1 6359911 6360378

Neighbor

gene id symbol gene type direction distance location
LOC103025956 fscn2,LOC107684083,LOC107722237,LOC107581600 coding downstream 72278 6273871 ~ 6287633 (-)
birc5 birc5,birc5a,LOC107684154,LOC107581679,LOC107722191,LOC108273465 coding downstream 88968 6268401 ~ 6270943 (-)
tmem235 tmem235 coding downstream 93234 6256404 ~ 6266677 (-)
pgs1 pgs1,LOC107690911,LOC107755482,LOC107722233,LOC107601408 coding downstream 181810 6153694 ~ 6178101 (-)
afap1l2 afap1l2 coding downstream 321319 5980989 ~ 6038592 (-)
LOC103027554 NA coding upstream 192955 6553333 ~ 6558835 (-)
bicral gltscr1l coding upstream 207011 6567389 ~ 6578059 (-)
LOC103045903 LOC108426443 coding upstream 344690 6705068 ~ 6711220 (-)
LOC103031455 si:ch73-127m5.2,LOC108426537,LOC107749848,LOC107561855,LOC107684095,LOC108274350,LOC107601426 coding upstream 350936 6711314 ~ 6715739 (-)
LOC103032713 camk2g1,camk2g,LOC108410509,LOC108273829,LOC107561852,LOC107684098,LOC107690933 coding upstream 526331 6886709 ~ 6993101 (-)
G34829 trub1,LOC107755443,LOC107702428 non-coding downstream 207050 6149230 ~ 6152861 (-)
G34791 NA non-coding downstream 316472 6042925 ~ 6043439 (-)
G34769 NA non-coding downstream 347242 5927689 ~ 6012669 (-)
G34765 adrb1 non-coding downstream 467920 5887038 ~ 5891991 (-)
G34760 nhlrc2 non-coding downstream 491979 5862457 ~ 5867932 (-)
G34987 timm23a,timm23,LOC103030206,LOC108426535,LOC107690962,LOC107561858,LOC107684090 non-coding upstream 315201 6675579 ~ 6679954 (-)
G34988 NA non-coding upstream 319973 6680351 ~ 6680909 (-)
G34997 NA non-coding upstream 368483 6728861 ~ 6729154 (-)
G34998 NA non-coding upstream 370564 6730942 ~ 6731499 (-)
G35069 NA non-coding upstream 600795 6961173 ~ 6961993 (-)
ablim1 ablim1 other downstream 212600 6049001 ~ 6147311 (-)
G34770 NA other downstream 420511 5935835 ~ 5939400 (-)
ccdc186 ccdc186,LOC107755417,LOC107689962 other downstream 431757 5903588 ~ 5928154 (-)
tcf7l2 tcf7l2,LOC107755529,LOC107566231,LOC106949585 other downstream 997425 5255619 ~ 5362486 (-)
psme4 psme4,psme4b,LOC108426507,LOC107584369,LOC107749369 other downstream 1363998 4971698 ~ 4995913 (-)
LOC103026268 bahcc1 other upstream 6306 6366684 ~ 6513701 (-)
G34953 NA other upstream 176643 6537021 ~ 6541364 (-)
ndufaf8 NA other upstream 182766 6543144 ~ 6546582 (-)
G34981 qki2,LOC103029551,LOC108426533 other upstream 259302 6619680 ~ 6653585 (-)
LOC103030829 NA other upstream 327789 6688167 ~ 6696291 (-)

Expression


Co-expression Network