G34953


Basic Information

Item Value
gene id G34953
gene name NA
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 6537021 ~ 6541364 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU47043
TATGTACAGATCCGATTTTATTCCCGAAGCACAGAAGAGATGTAGctcacagtgtttttaaaaggcTTTTTGACTGAAAAATGTCTAATGTATGCTCCTTGCTTGGTCAAATGTccaaacacataaaataaaacaaaataaaagctcaGGTCCAATTTCAAATGAGGTTTAACACAAGAGGGTTCATCACTGCTTTACACATTAGAAACATTAATGAAGTCTTTTACAGTACAGTCAGTGAACAGGAACTATAGGGGGCAACCTGGAGGAGCAAGCATCTCTCACCCTCTTAAAGAGTGGACACGACTGACAAATAAGGCactgaaaacacaaaacattcaTAGCCAAGAATAAGGACTGTAGATGGTCCATGGAAAGATAATGGATTTGCACAGACAGCAATGTAATTCAATGCAAATTGGAATAGAACTGAATTGCATACTTTGTATACTCttgatatattttcaaaaacaaaCATGGAATTTATACCTGTACAATTGGTCCATTTTTTTCCCGATTGTGCCTTTAGAAAATGTCTACTTGACTACATCAAGAATAAATATTAAGAtacactcgttttttttttttttttatacttcttTCACATTTACACAAAGTTTTATAGCTGTAACAAACTAACTATGATTTTGGGGAGAGctgctttgtatttttttgtttggaatggaaaaaaataaattacaaaatattttggTCTACAAAAATAGAATTTGCATAAAACTTTGAATGAATGATTTTACAATTCTGTTTTTTGGTGatgttactttgttttttttataaacaataaaGGAACATTTGCAAAGTGCTCCAAACATTCCAAAAACATTcttattacagcacttcatatcagCTAATCCCCTGTTCAGTAATAAACCCTTATCTATGTGGACAAAAAGGCCATAACGGATTAGCCACATCTGGATGAGTGCTGGGAGAGTACAGGCAGTACAGGAGGAATATATTTAATTTGCTTGTAAGGCTAGAGATACTCTCGCTATTTGATCATGGGTTTGTATAAACGGCTGACTGCAATGAAAATGTAACTGCCTCCACAAGAGGCTACTACTTGCTCCAGTAGCAAGAACCAATCATAAAGATGCAGGTAATTGGAGAATTGGTCACACAGCCTGGCTGCATCCCAATTGCATCCTACTAATCAGGTTTGGGGTGTCAGGTTAGTACACAACATATTAACATACAAACCCATTTTGTACTAACAGGAAATGATAAGGCATTGCTACGCAAATATACATCGCAACAAGTTCTCTAGCTGCCgtttttaataatacaattcCAGAAGGAACACTTAATAGCCGACCAGTTCTGagtatgtattgtatatttGAGTATACTCAACCCTGAAACTGTTCTCTACACTACATACTCAAaaactagctaatgttagcaatTAGTATGCAATTGAGACGCACCACCTTTACTCAAAACGATCTGTCATTTTGATGCTGCTGAGTGCCTGCACTGCCCCTACCATTTTTTGTGTATTGAACCTTACATGTGTGACAATTATGTGCAcaaccaacacaaacacatagTTAACAGAAAGTATATACTACCTCTAGCCTTTAGCCTTCCAAACACTGTCTTTGACACGAGTCTTAGTTTAATAGTATGTGGAACTCGGTAGAGACGCACAAGTaatatttcctttaaaaaattaacttaacttaaactGAGCACAGCTGGCAACTTGGGTGATTTTACAGTGTTGGGTCCTGAAATCAGTTTAAGAGACTTGAAAATCACCTCTAGCGCCCAGTTCTCTCTCACTTTAGAGCTATGTTTAacacattcagcttaaaatcattttataacCTACAAAACTGATAAAACACAGTATAGGTCCCACAAATCCATGTCCTGGCCTCATACGAACAGCACAGCAAAGATATCTTCATCTTATTCTTCATGTGTTCGAAGGACATTAAAAGCAAACAGTTAGAACACCCTACCGAAAGTGTGCCCCTAACCACTCGGCACAGGAAGGAAAGCAAAGAACAGGAAGTTTACAGTACAGCAATGAATATTGTCTCTGCAGCCACTAAGCTGTTCTAGGACATGACCTACTGCAGAGTTGAAGAAGGTCTGCTGACCTCAAGAAGAAGAGCGGTTAAGTCCTTTGTTATATTCCGTTGGTGGAATATGTGCtgaaaaataatctaaattgaACGTACAAGtagaacagttttattttaaagactttACCATCTTAGAGAAAAACTAGTGgttggtgtagtgtagGGTTGGATTCCTCAGCTAGGCAAGCACAACACACTACACCAACAGGAGTCATGGGTTAGACTCCTAAAGCTACATTCTTCTAATTGTGTAACATGATTCAaatgtaagtcgctctggataaaagCATCGATCAAATGCTATATATTTATGCAACTCATCTTTTTCCTTTTAGACCTGGAGTGAATGTAAACGTATCTACcgtatatgttttaatatattgcaCAATATCAGGGCTGGTAACTGTtaaaaagaagaacaagaagaaacccatgaagaaagagaaaagagagagtgtgtgtgtctgtgtgcatgtgtgtgtaagtgaatgATAAATAGTCCTCCTATTCTGAATTTTCTCTCTGTGTAGTCTGTTTAATCTGGCGGGAGTGAACAACACCTCCAGCCAGTAGCTGACCCTCCAGGGCAGCATGGAGGTCCAACCCCCCCATCTCCAGCACAGACTCGAGCACCCCTCGGTCCTCAGCCCCTAATGCCCTGCGCCTCCTCCGCAGGTCCATGTCCCCATCCTCTCTGCTCTTCTTCTCACCCGCCTGAGGCTCCTGGAGGTCAGGAATTAAGTTCTCCTTCAGGTCCCTGCCCCCTTTCTTCTGAGGTTCAGGTGCGCGACCCCGTTTATGGTCAGCCACCTTCTGACTGTCGTCCCTCTTGCTGTCGATTACCTGCTGCATCTGGGCCAGTTTTtctctctgctcctccatctTCTGCTCCCTCTCCGCCAGCTTCACAAGCTCATTATCGGTCTTCTGCTGCTCCATCTTCAGCCTTTCTGCCTCCAGACGCTCACTCTCTAACCGCTCTTTCTCCTGGCGAATGCGTTCCAGCTCTTGATCCCGCATAagcttctcttttctctccctctccttgcGTTCTTTCTCCACTCTGGCTAGTACTTCCTTCTCAATCCTCTCTTTCTccaatttttctttttcaatccTCTCCTTCTCTGCTTCTAGCTGCACAAGCCTCTTTCTAACTATCTCCTCTTCTGCTGCAATGTCTTCAGGTTTCCTCTGCTCCAGACTGTCTTTGGGCTTTTCTGCTACAGCTTTGGCAGGTTCAGGGTTGTGCTGGTGCAGTGGAACACCCCTTGCACCCAGCTCCTTCTGCGAATTGTCAGGCTGCACTTTTACATCACCCACATTTTGTGCTTCTTGAGGAGGCTCCTTATCCACCTTTTGAGGCACCACAGCTTCACCTTGTGCTGGTTCGTCAAGCTCTTGTGCTGGTTTCTTCACAGCATGGGCTTCCTTTTCTTGGGATGCAGCTACATGTGGTTCTTGATGGTTGTCTGACCCTTGTTCTGGAGCTTTTACCCTTACTGCCTCCTCCACTGCTTCAGGCTGCTGCTGTACTCCTTTGCCCACCTCTGCAGCGACTTcacCTCCTGCAGCTTTGGGTTCCTCatcctcttctttcttttgGTGAATCTCTTTGTGCTGCTCCTCGATGACAGCCAGGAGCTTCTCCTGCTGGTCCAGTAGCCTCTTCTGCTGCTCTTGTTGCTCCTTGATCACCTGCAGCAGCACGGCGTGGTCAAGCACCCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU47043 True 3842 TUCP 0.42 3 6537021 6541364

Neighbor

gene id symbol gene type direction distance location
LOC103025956 fscn2,LOC107684083,LOC107722237,LOC107581600 coding downstream 249388 6273871 ~ 6287633 (-)
birc5 birc5,birc5a,LOC107684154,LOC107581679,LOC107722191,LOC108273465 coding downstream 266078 6268401 ~ 6270943 (-)
tmem235 tmem235 coding downstream 270344 6256404 ~ 6266677 (-)
pgs1 pgs1,LOC107690911,LOC107755482,LOC107722233,LOC107601408 coding downstream 358920 6153694 ~ 6178101 (-)
afap1l2 afap1l2 coding downstream 498429 5980989 ~ 6038592 (-)
LOC103027554 NA coding upstream 11969 6553333 ~ 6558835 (-)
bicral gltscr1l coding upstream 26025 6567389 ~ 6578059 (-)
LOC103045903 LOC108426443 coding upstream 163704 6705068 ~ 6711220 (-)
LOC103031455 si:ch73-127m5.2,LOC108426537,LOC107749848,LOC107561855,LOC107684095,LOC108274350,LOC107601426 coding upstream 169950 6711314 ~ 6715739 (-)
LOC103032713 camk2g1,camk2g,LOC108410509,LOC108273829,LOC107561852,LOC107684098,LOC107690933 coding upstream 345345 6886709 ~ 6993101 (-)
G34939 NA non-coding downstream 176643 6359911 ~ 6360378 (-)
G34829 trub1,LOC107755443,LOC107702428 non-coding downstream 384160 6149230 ~ 6152861 (-)
G34791 NA non-coding downstream 493582 6042925 ~ 6043439 (-)
G34769 NA non-coding downstream 524352 5927689 ~ 6012669 (-)
G34765 adrb1 non-coding downstream 645030 5887038 ~ 5891991 (-)
G34987 timm23a,timm23,LOC103030206,LOC108426535,LOC107690962,LOC107561858,LOC107684090 non-coding upstream 134215 6675579 ~ 6679954 (-)
G34988 NA non-coding upstream 138987 6680351 ~ 6680909 (-)
G34997 NA non-coding upstream 187497 6728861 ~ 6729154 (-)
G34998 NA non-coding upstream 189578 6730942 ~ 6731499 (-)
G35069 NA non-coding upstream 419809 6961173 ~ 6961993 (-)
LOC103026268 bahcc1 other downstream 23320 6366684 ~ 6513701 (-)
ablim1 ablim1 other downstream 389710 6049001 ~ 6147311 (-)
G34770 NA other downstream 597621 5935835 ~ 5939400 (-)
ccdc186 ccdc186,LOC107755417,LOC107689962 other downstream 608867 5903588 ~ 5928154 (-)
tcf7l2 tcf7l2,LOC107755529,LOC107566231,LOC106949585 other downstream 1174535 5255619 ~ 5362486 (-)
ndufaf8 NA other upstream 1780 6543144 ~ 6546582 (-)
G34981 qki2,LOC103029551,LOC108426533 other upstream 78316 6619680 ~ 6653585 (-)
LOC103030829 NA other upstream 146803 6688167 ~ 6696291 (-)
G35429 NA other upstream 2383464 8924828 ~ 8927717 (-)
tbata NA other upstream 2397569 8938933 ~ 9003896 (-)

Expression


Co-expression Network