LOC111192361


Basic Information

Item Value
gene id LOC111192361
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 7115855 ~ 7119167 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU47275
TAGATATTTGAGAATCACGCTTTATAAACTGCTGGCCGGAGGAAGTGGGGGCGTGTAGCTAACGTTACGTGTTTTGGTGCATGTCTGGAGCTTTATATTCCAGCATGAAGCAGTACACTTTATCAGCAAAAAAGCGTCTGGCCAAGCCGCTGCTGTTCGGCGCTTTACTCACAGGACTTGCAACAGCGTTCTATAACAGGCATTTGTTCTTTGAAGACCTGGCAGAAATTCGGGAGCAGGAGCGAGCTCGCACTGATGCCAAACTTTTAGAAGTGTTAGAAAGAAGACAGAAACAAATGGAAGAGCTGGAGTCAAAgaaaagtgctggggacaggtGAGCTTATCACACACCTCCAGGCAAAGGTAATCAGAGTGACACTGATGGGGGTTAGGAGTTTGAGTTTTGTGATGAACTGAAAAATTTATGACCGCTATAAAGAAAAATGGTGaattaggaataaaaaaaagaagtcaaCAGAAGGACCTTCAATTTTCTGTGGACTGGAAGCTCAATTTGACTCTGGACACCTCCTCACTACTGAAGTGTAATCACAGGATTGAAGATCTGAAGATTCCCAAGACAGGCGAACAAAAACAAACTGTATTACTGTTGGTTATGTGAGTTCCtaatttgtttaatatataagCTTAAATAAGATGCATTTTCTCTCTCAGTGTAAAACATTAACTCACAATAAAGATAAGTGTTATAGTGTGTTCCATGATGAATGCTTCTTTTGAAGTGCATTTCCTCTGCCTAGTATCTGCCCAATAATGGGATTACAGTGTACAAAATCAGAATACTGcttacatttaatttctgtaTGAATATCTACaagtaaaaatctaaaatatacatGAAAGTGTTTTGAGCAAAAGCTGAACATTTTCAGTGAAAGATGAATGTAAATGTTCACATTAGTGAGAAAATGga
>TU47276
GGGGGCGTGTAGCTAACGTTACGTGTTTTGGTGCATGTCTGGAGGTCAGAGCTCTGAGTCTATGcagaaaatacagtttattatttaacagctttattcactgttttctctctcttttctctttatgGATATTCCAGCTTTATATTCCAGCATGAAGCAGTACACTTTATCAGCAAAAAAGCGTCTGGCCAAGCCGCTGCTGTTCGGCGCTTTACTCACAGGACTTGCAACAGCGTTCTATAACAGGCATTTGTTCTTTGAAGACCTGGCAGAAATTCGGGAGCAGGAGCGAGCTCGCACTGATGCCAAACTTTTAGAAGTGTTAGAAAGAAGACAGAAACAAATGGAAGAGCTGGAGTCAAAgaaaagtgctggggacaggtGAGCTTATCACACACCTCCAGGCAAAGGTAATCAGAGTGACACTGATGGGGGTTAGGAGTTTGAGTTTTGTGATGAACTGAAAAATTTATGACCGCTATAAAGAAAAATGGTGaattaggaataaaaaaaagaagtcaaCAGAAGGACCTTCAATTTTCTGTGGACTGGAAGCTCAATTTGACTCTGGACACCTCCTCACTACTGAAGTGTAATCACAGGATTGAAGATCTGAAGATTCCCAAGACAGGCGAACAAAAACAAACTGTATTACTGTTGGTTATGTGAGTTCCtaatttgtttaatatataagCTTAAATAAGATGCATTTTCTCTCTCAGTGTAAAACATTAACTCACAATAAAGATAAGTGTTATAGTGTGTTCCATGATGAATGCTTCTTTTGAAGTGCATTTCCTCTGCCTAGTATCTGCCCAATAATGGGATTACAGTGTACAAAATCAGAATACTGcttacatttaatttctgtaTGAATATCTACaagtaaaaatctaaaatatacatGAAAGTGTTTTGAGCAAAAGCTGAACATTTTCAGTGAAAGATGAATGTAAATGTTCACATTAGTGAGAAAATGga
>TU47277
GGGGGCGTGTAGCTAACGTTACGTGTTTTGGTGCATGTCTGGAGCTTTATATTCCAGCATGAAGCAGTACACTTTATCAGCAAAAAAGCGTCTGGCCAAGCCGCTGCTGTTCGGCGCTTTACTCACAGGACTTGCAACAGCGTTCTATAACAGGCATTTGTTCTTTGAAGACCTGGCAGAAATTCGGGAGCAGGAGCGAGCTCGCACTGATGCCAAACTTTTAGAAGTGTTAGAAAGAAGACAGAAACAAATGGAAGAGCTGGAGTCAAAgaaaagtgctggggacaggtGAGCTTATCACACACCTCCAGGCAAAGGTAATCAGAGTGACACTGATGGGGGTTAGGAGTTTGAGTTTTGTGATGAACTGAAAAATTTATGACCGCTATAAAGAAAAATGGTGaattaggaataaaaaaaagaagtcaaCAGAAGGACCTTCAATTTTCTGTGGACTGGAAGCTCAATTTGACTCTGGACACCTCCTCACTACTGAAGTGTAATCACAGGATTGAAGATCTGAAGATTCCCAAGACAGGCGAACAAAAACAAACTGTATTACTGTTGGTTATGTGAGTTCCtaatttgtttaatatataagCTTAAATAAGATGCATTTTCTCTCTCAGTGTAAAACATTAACTCACAATAAAGATAAGTGTTATAGTGTGTTCCATGATGAATGCTTCTTTTGAAGTGCATTTCCTCTGCCTAGTATCTGCCCAATAATGGGATTACAGTGTACAAAATCAGAATACTGcttacatttaatttctgtaTGAATATCTACaagtaaaaatctaaaatatacatGAAAGTGTTTTGAGCAAAAGCTGAACATTTTCAGTGAAAGATGAATGTAAATGTTCACATTAGTGAGAAAATGga
>XR_002649863.1
GATCACTGCGCCATTTGAGACTGAGCCGGGGTTCACCTCTCTGGATCTTCCCCCTGGATAATTCAGCAATGTTTTGTAGTTCCTCTCAAACATTGACTTTGTCGTAAATATTTTGAAACCTACTTTTACGTTTCACTCGAGGCTACAACGATTAATTTGggttattgtacttttattataatttttaaatgtatattaaagtgGCAGTAAATGAAAAATCCAAGTAGATATTTGAGAATCACGCTTTATAAACTGCTGGCCGGAGGAAGTGGGGGCGTGTAGCTAACGTTACGTGTTTTGGTGCATGTCTGGAGCTTTATATTCCAGCATGAAGCAGTACACTTTATCAGCAAAAAAGCGTCTGGCCAAGCCGCTGCTGTTCGGCGCTTTACTCACAGGACTTGCAACAGCGTTCTATAACAGGCATTTGTTCTTTGAAGACCTGGCAGAAATTCGGGAGCAGGAGCGAGCTCGCACTGATGCCAAACTTTTAGAAGTGTTAGAAAGAAGACAGAAACAAATGGAAGAGCTGGAGTCAAAgaaaagtgctggggacaggtGAGCTTATCACACACCTCCAGGCAAAGGTAATCAGAGTGACACTGATGGGGGTTAGGAGTTTGAGTTTTGTGATGAACTGAAAAATTTATGACCGCTATAAAGAAAAATGGTGaattaggaataaaaaaaagaagtcaaCAGAAGGACCTTCAATTTTCTGTGGACTGGAAGCTCAATTTGACTCTGGACACCTCCTCACTACTGAAGTGTAATCACAGGATTGAAGATCTGAAGATTCCCAAGACAGGCGAACAAAAACAAACTGTATTACTGTTGGTTATGTGAGTTCCtaatttgtttaatatataagCTTAAATAAGATGCATTTTCTCTCTCAGTGTAAAACATTAACTCACAATAAAGATAAGTGTTATAGTGTGTTCCATGATGAATGCTTCTTTTGAAGTGCATTTCCTCTGCCTAGTATCTGCCCAATAATGGGATTACAGTGTACAAAATCAGAATACTGcttacatttaatttctgtaTGAATATCTACaagtaaaaatctaaaatatacatGAAAGTGTTTTGAGCAAAAGCTGAACATTTTCAGTGAAAGATGAATGTAAATGTTCACATTAGTGAGAAAATGgaaatgtttgtatgtttttaaaataaagaaatcaacTCTTta

Function

GO:

id name namespace
GO:0008137 NADH dehydrogenase (ubiquinone) activity molecular_function
GO:0003954 NADH dehydrogenase activity molecular_function
GO:0050136 NADH dehydrogenase (quinone) activity molecular_function
GO:0016651 oxidoreductase activity, acting on NAD(P)H molecular_function
GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor molecular_function

KEGG:

id description
ko00190 Oxidative phosphorylation
ko04260 Cardiac muscle contraction
ko04714 Thermogenesis
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05016 Huntington disease

RNA

RNA id representative length rna type GC content exon number start site end site
TU47275 False 934 lncRNA 0.39 3 7116079 7119127
TU47276 False 981 lncRNA 0.38 2 7116125 7119127
TU47277 False 888 lncRNA 0.39 3 7116125 7119127
XR_002649863.1 True 1198 lncRNA 0.38 3 7115855 7119167

Neighbor

gene id symbol gene type direction distance location
acsf2 acsf2 coding upstream 3664 7078789 ~ 7112191 (+)
LOC103036712 NA coding upstream 47327 7057908 ~ 7068528 (+)
slc16a5 NA coding upstream 59426 7043482 ~ 7056429 (+)
kctd2 kctd2,LOC108410512,LOC107666921,LOC107727321,LOC107582756 coding upstream 75170 7029131 ~ 7040685 (+)
LOC103033683 LOC108410508 coding upstream 87696 7021847 ~ 7028159 (+)
LOC103039861 stxbp4 coding downstream 156580 7275747 ~ 7292804 (+)
LOC103040176 LOC108443565 coding downstream 187139 7306306 ~ 7335081 (+)
ankfn1 ankfn1,LOC107684130,LOC107702427 coding downstream 233919 7353086 ~ 7466457 (+)
nog nog coding downstream 353740 7472907 ~ 7475245 (+)
LOC103035888 LOC107566522,LOC108435270,LOC107755508,LOC107684054,LOC108273414 coding downstream 464660 7583827 ~ 8281690 (+)
G35096 NA non-coding upstream 38698 7076688 ~ 7077157 (+)
G35031 NA non-coding upstream 65226 6987832 ~ 7050629 (+)
G35037 NA non-coding upstream 95052 7017313 ~ 7020803 (+)
G35034 sec24c non-coding upstream 105938 7005776 ~ 7009917 (+)
G35012 NA non-coding upstream 173584 6809228 ~ 6942271 (+)
G35102 NA non-coding downstream 6787 7125954 ~ 7159316 (+)
LOC103039044 NA non-coding downstream 111086 7230253 ~ 7231321 (+)
G35143 NA non-coding downstream 114468 7233635 ~ 7233863 (+)
G35148 NA non-coding downstream 202753 7321920 ~ 7322957 (+)
G35244 NA non-coding downstream 988993 8108160 ~ 8108470 (+)
G35021 NA other upstream 211858 6902417 ~ 6903997 (+)
G34931 NA other upstream 384431 6730954 ~ 6731424 (+)
LOC103029551 qki2,LOC103029551,LOC108426533,LOC107684089,LOC108274051,LOC107749853,LOC107755469 other upstream 452248 6592607 ~ 6663607 (+)
slc38a10 slc38a10,LOC102792191,LOC107749860 other upstream 574395 6502145 ~ 6541460 (+)
LOC103045604 LOC108426437,LOC107683136 other upstream 857805 6246646 ~ 6258050 (+)
fasn fasn other downstream 1267006 8386173 ~ 8438865 (+)
LOC103037241 wac,waca,LOC107738973,LOC107665881,LOC107749376 other downstream 1322965 8442132 ~ 8472989 (+)
LOC103024481 adamts14,LOC103367006 other downstream 1600187 8719354 ~ 8851392 (+)
G35744 mrpl38 other downstream 3352213 10471380 ~ 10475783 (+)
dock1 dock1,LOC107740868 other downstream 3628470 10747637 ~ 11001805 (+)

Expression


Co-expression Network