G35300


Basic Information

Item Value
gene id G35300
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 8407480 ~ 8408610 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU47525
ggaaaacattagcaactgcctagcaaccactttagaaatgaaagcaactgctaagcaaccagttagcaacagcttagcaaccacctggaaaacattagcaactgcctagcaacagcttagcaaccacttcagaaatgatagcaaccgcctagcaacagaTTAGCAATCAAaagtttaaccaaaagttttacgatttcagcatttaaacaaacgttttttagatttcagcgtttaaccaaacgtttttagatttcagtgtTTAACCAAacttttttagatttcagcgtttttagcatttagcatttagcgAAAGGTTAACAGCATATCAGTGacccttcacactcttcatacttttctttattgttattaattttaaagttgTAACGTTATACTGAGGTGTAGAATTTTACTCTAATTATTGCATTTAGGTACTGTAAGATGaactcattgctgacacagctAGAACAAAATGAGATGCTGTAGTGCCTGAAGCCACAGTTTCTACAGCCAAGTGTCAGCTAGAGGGGTGTAAAACTGTCCCCTACTCCCTTTACCCAGCATTGCACTTTTGATTAGTTGATCTGCATTTTTTGGTGGGATGCAGAGCTATACatccatatatatttatttatatctccAACAGTATAAGTCAGAGTAGTATTTGGGATTCAGAAGCAAACATCCAACATCAGCACCTGACTAACCTTACTAATTATCTTGTGGCTGATTGCATCCAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU47525 True 738 lncRNA 0.37 2 8407480 8408610

Neighbor

gene id symbol gene type direction distance location
ccdc57 ccdc57 coding upstream 5837 8361499 ~ 8401643 (+)
LOC103030301 csnk1db,LOC103030301,LOC108435268,LOC107566590,LOC107684056,LOC107702480,LOC107755503,LOC103369437 coding upstream 47227 8347603 ~ 8360253 (+)
LOC103035888 LOC107566522,LOC108435270,LOC107755508,LOC107684054,LOC108273414 coding upstream 125790 7583827 ~ 8281690 (+)
nog nog coding upstream 932235 7472907 ~ 7475245 (+)
ankfn1 ankfn1,LOC107684130,LOC107702427 coding upstream 941023 7353086 ~ 7466457 (+)
LOC103030936 bambi,bambia,LOC107749375,LOC107676764,LOC107584374,LOC108274338,LOC107549411 coding downstream 74261 8482871 ~ 8487451 (+)
pald1 pald1 coding downstream 190572 8599182 ~ 8703597 (+)
LOC103023541 LOC108441018,LOC107709014,LOC107595168 coding downstream 585833 8994443 ~ 9029155 (+)
LOC103022911 LOC108413183 coding downstream 768628 9177238 ~ 9207684 (+)
LOC103043335 npffr1 coding downstream 812121 9220731 ~ 9267596 (+)
G35299 NA non-coding upstream 87 8406851 ~ 8407393 (+)
G35244 NA non-coding upstream 299010 8108160 ~ 8108470 (+)
G35148 NA non-coding upstream 1084523 7321920 ~ 7322957 (+)
G35143 NA non-coding upstream 1173617 7233635 ~ 7233863 (+)
LOC103039044 NA non-coding upstream 1176159 7230253 ~ 7231321 (+)
LOC111192363 NA non-coding downstream 65630 8474240 ~ 8491226 (+)
G35359 NA non-coding downstream 143800 8552410 ~ 8552834 (+)
G35361 NA non-coding downstream 148626 8557236 ~ 8560349 (+)
G35362 NA non-coding downstream 151751 8560361 ~ 8562959 (+)
G35400 NA non-coding downstream 492575 8901185 ~ 8901451 (+)
G35021 NA other upstream 1503483 6902417 ~ 6903997 (+)
G34931 NA other upstream 1676056 6730954 ~ 6731424 (+)
LOC103029551 qki2,LOC103029551,LOC108426533,LOC107684089,LOC108274051,LOC107749853,LOC107755469 other upstream 1743873 6592607 ~ 6663607 (+)
slc38a10 slc38a10,LOC102792191,LOC107749860 other upstream 1866020 6502145 ~ 6541460 (+)
LOC103045604 LOC108426437,LOC107683136 other upstream 2149430 6246646 ~ 6258050 (+)
LOC103037241 wac,waca,LOC107738973,LOC107665881,LOC107749376 other downstream 33522 8442132 ~ 8472989 (+)
LOC103024481 adamts14,LOC103367006 other downstream 310744 8719354 ~ 8851392 (+)
G35744 mrpl38 other downstream 2062770 10471380 ~ 10475783 (+)
dock1 dock1,LOC107740868 other downstream 2339027 10747637 ~ 11001805 (+)
G35903 NA other downstream 3392848 11801458 ~ 11802204 (+)

Expression


Co-expression Network