LOC111192363


Basic Information

Item Value
gene id LOC111192363
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 8474240 ~ 8491226 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU47529
cactcactcactcactctcagcatGTAGCTCCACCGCAGCAGCACGAGCATAGACTGTGTAGGTGTATCTAGGCGCATGCTTGTTCCATGAGGACGGCGTGAATTACAGAGCAGAAATAAAGCGTTTTCCTGCTTTTATTACAACGTTTAACTGGATGACACTCACATTACAGGCCTGCAGTGACTGTGAGGGGAAGATATAAACAGGACTTCATGAAACAGGTGACCTTGCTGCGAGTCAGGACCCCTGCAAGACGCCATTAGCGGGCCGTCCACTTAACAGCCGCTAGCATTAGACAGGACAGTACAGGACAGGACAGCTGTGCAGCTGATAATAAGACTTCCAGATGAAGAGCCGAGACCAGCAGTGGACCTGATCTCAGCAGATCACAAAGCCCGG
>XR_002649865.1
aaataatctcAAATTCCCCATagcatataaataaaacacttgaACTTGAACCTCTGCACCTTTTTATACATACAGTTATAATGATTTATTCATTAAGTAATTTAGTTTAGTAATTGCTAGATAGCACGCATTgtgtggtaaaaataaaaacaaaatgtagcaTGCACAAGTGTTCTGATGTGTTGTGTTTCATATTATGatgtttgtattttaattaCCTTTAATTTTCTTCAATATACaacatgtatttattacattttagtcagttttgttttttttcacttataaaataaaccaaacttgTGTAAAAGCTGGGTTTTAAAATGTGCCGTTCTGATGCTAAACACTAGAGAGcagcactcactcactcactctcagcatGTAGCTCCACCGCAGCAGCACGAGCATAGACTGTGTAGGTGTATCTAGGCGCATGCTTGTTCCATGAGGACGGCGTGAATTACAGAGCAGAAATAAAGCGTTTTCCTGCTTTTATTACAACGTTTAACTGGATGACACTCACATTACAGGCCTGCAGTGACTGTGAGGGGAAGATATAAACAGGACTTCATGAAACAGGTGACCTTGCTGCGAGTCAGGACCCCTGCAAGACGCCATTAGCGGGCCGTCCACTTAACAGCCGCTAGCATTAGACAGGACAGTACAGGACAGGACAGCTGTGCAGCTGATAATAAGACTTCCAGATGAAGAGCCGAGACCAGCAGTGGACCTGATCTCAGCAGATCACAAAG
>XR_002649866.1
gcagaagcttatagaaacaatgccacagcgaataTGTTAAGCAATGAAAGCTCAAggcggtccaacaaaatattttggCCAAGCAGTTAGTATTTATATGACTGACATTTTTATAACCCGTAGTATAACCAGTAGTCTTTATTCAAAGAGTAAGGATATAAAAGTGCATTAATATGCTGTAATATATGTAATCTATATAAAAATCTAGAGTTTAGTTTTTAGGTTGTTTAGTTTTCCgtgtttttttagattatcataGATTAAATATCGgttctctttctcatttaatccgtgcttttaatgtttttttttttatgaaaataaattagTGTTATATTTGGGGGTCCAGTTCCCAGTCCACACACTCATTTCTACTCACCTGGATTTTTTCTAATCAGTCAAATGCTTCCATCTACTGGTGAAATATTGGTACAGCGacattttaaggtggaatggaaataaCTTGAAAAATAAATAGCTAACCTGGGCCTCGTCACTGCTTACCTGTTTAAAAGCTCAGGTGgcacaaacagcacaacctctcctgtaaaaacaaacatagTTCTGTTAGGTGCTGCTAAGATTTACCACACAAGCCCACCAAACATAAAAGCTGCCTAAGTAGTCATCTATAGtcctgttgtttatttattttcttagtttGCTCTGTTcttacatttcacatttttatttgttgcatgtatttgtattgttttaaattatgcatttaggtgtttttatttttttctctttcattttcatatttactgTACAATAGCTCAGTTGAttgtttctctctcattttactATTTCCCCcccattttatatatgtttgtgcaaaataaataaattataaaaggGATAATGGAAAGAGAAGTGTACTTGTACCCAAATTACCCATATTAGGCTCATTTTAATACAAGATAATCCCATAACAATAgataaaacacatataaacacaaatcAAAACTCCACAAAAATGCATGAAAagtccctaaaataagcaactGCAACATTTTCTCACATTTAAGCCACTGCAGTGTCTAATACCAAtctgttctttttctcttttggtTGTAAAGGGTATAGGCACCTTCCCCTCTCACACCAGCCAGGACTCAGGTCAGATTTCCTCTTATGATTCATTTGGCTAAGCAGCTACACCAGTGAAGGTGTGAACAATAAACACGTAATGTGTAAACGGAGCCACAAGCCCTTCACACCCCTCTCAGAAATCTCCCTCTTTAAACTCTGGCTTGATGACCCCTCCCCTCctaaaaaaaaggccagGCCTGCAGTGACTGTGAGGGGAAGATATAAACAGGACTTCATGAAACAGGTGACCTTGCTGCGAGTCAGGACCCCTGCAAGACGCCATTAGCGGGCCGTCCACTTAACAGCCGCTAGCATTAGACAGGACAGTACAGGACAGGACAGCTGTGCAGCTGATAATAAGACTTCCAGATGAAGAGCCGAGACCAGCAGTGGACCTGATCTCAGCAGATCACAAAG

Function

GO:

id name namespace
GO:0006259 DNA metabolic process biological_process

KEGG:

id description
ko03420 Nucleotide excision repair
ko03460 Fanconi anemia pathway

RNA

RNA id representative length rna type GC content exon number start site end site
TU47529 False 400 lncRNA 0.51 3 8479879 8491226
XR_002649865.1 False 752 lncRNA 0.39 3 8479522 8491221
XR_002649866.1 True 1512 lncRNA 0.37 5 8474240 8491221

Neighbor

gene id symbol gene type direction distance location
ccdc57 ccdc57 coding upstream 72597 8361499 ~ 8401643 (+)
LOC103030301 csnk1db,LOC103030301,LOC108435268,LOC107566590,LOC107684056,LOC107702480,LOC107755503,LOC103369437 coding upstream 113987 8347603 ~ 8360253 (+)
LOC103035888 LOC107566522,LOC108435270,LOC107755508,LOC107684054,LOC108273414 coding upstream 192550 7583827 ~ 8281690 (+)
nog nog coding upstream 998995 7472907 ~ 7475245 (+)
ankfn1 ankfn1,LOC107684130,LOC107702427 coding upstream 1007783 7353086 ~ 7466457 (+)
pald1 pald1 coding downstream 107956 8599182 ~ 8703597 (+)
LOC103023541 LOC108441018,LOC107709014,LOC107595168 coding downstream 503217 8994443 ~ 9029155 (+)
LOC103022911 LOC108413183 coding downstream 686012 9177238 ~ 9207684 (+)
LOC103043335 npffr1 coding downstream 729505 9220731 ~ 9267596 (+)
LOC103040920 sdk2,sdk2b coding downstream 1338259 9829485 ~ 10373341 (+)
G35300 NA non-coding upstream 65630 8407480 ~ 8408610 (+)
G35299 NA non-coding upstream 66847 8406851 ~ 8407393 (+)
G35244 NA non-coding upstream 365770 8108160 ~ 8108470 (+)
G35148 NA non-coding upstream 1151283 7321920 ~ 7322957 (+)
G35143 NA non-coding upstream 1240377 7233635 ~ 7233863 (+)
G35359 NA non-coding downstream 61184 8552410 ~ 8552834 (+)
G35361 NA non-coding downstream 66010 8557236 ~ 8560349 (+)
G35362 NA non-coding downstream 69135 8560361 ~ 8562959 (+)
G35400 NA non-coding downstream 409959 8901185 ~ 8901451 (+)
G35454 NA non-coding downstream 538242 9029468 ~ 9033192 (+)
LOC103037241 wac,waca,LOC107738973,LOC107665881,LOC107749376 other upstream 1251 8442132 ~ 8472989 (+)
fasn fasn other upstream 35375 8386173 ~ 8438865 (+)
G35021 NA other upstream 1570243 6902417 ~ 6903997 (+)
G34931 NA other upstream 1742816 6730954 ~ 6731424 (+)
LOC103029551 qki2,LOC103029551,LOC108426533,LOC107684089,LOC108274051,LOC107749853,LOC107755469 other upstream 1810633 6592607 ~ 6663607 (+)
LOC103024481 adamts14,LOC103367006 other downstream 228128 8719354 ~ 8851392 (+)
G35744 mrpl38 other downstream 1980154 10471380 ~ 10475783 (+)
dock1 dock1,LOC107740868 other downstream 2256411 10747637 ~ 11001805 (+)
G35903 NA other downstream 3310232 11801458 ~ 11802204 (+)
bnip3 bnip3,LOC107553688,LOC107653114,LOC107582186,LOC107706607 other downstream 3620464 12111690 ~ 12566941 (+)

Expression


Co-expression Network