G35362


Basic Information

Item Value
gene id G35362
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 8560361 ~ 8562959 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU47613
GCCTATTTTGAGCTCACTTACAGTATATAAGAGTAGCAGTTTGATACATGCTCATGCATGGTTTTAGACTGGTGTAGATCTGGAATCTGAAGTGAACTGGAGAAGTGAGTTTTGTCTAtgggtgttttcacactagcACTacttggtccggttaaaacagaCCCCCTTAGTGCGGTTAAATTAAGATTGCGATTACTATCCCAAACtaactctggagcggtttgcttatggtgagaacatgatctggtctcgatccgacccagctattaaatatactccttttatttgacctaaactgctgataaggcgcagtttaatctgatatattagccagataacgccctattaaaaacactgtgtttaaaagcattacagcgttctgtgttaaagcagctctaaactgcacagatatacgtgctggaacacagaatcttctcactatatttactttcttgctcccgcaccagacagctctgaccaatcagaggagacaatgtgcttgcatggttttattggtgcgcattttgatGCAAtaaggtttatgcctgtgtgaaaccaaaccaaacagagggagaaacaaaAACTCATCTCCTGAtccggaccagagaaaccaactacaggtgtgaaaatgctctaaatgtgtAAATTGATGTCAATTTTAGCAGCCAAACAAactttcagctttcagttaaggCATCGTAGTAACTGTCTATGGcaagtgaaagtgtgtgtgtgtttgtgcgtgtgtgagtataaataaatgagctTGAGAGTtgccacttcattagaaactCCTACATTGTGCTTCTATTCCCTATTacttcagggttcatacactttttaaccaataaattttaatgattttccaggacttttccatgccttcaaggcaaatgtCAATGACCATGCGATTTTTAATACATCAGTGCAGATATAGACAgttaaaccaaaaatcaactaaaactatgatcgcaattgattatagtaggtctaaaattaatcagataaaatgttgacacacaatctttaatattctttaataaaatgtgtatcaGATCCTGATAGCTTTATTGTGTAGAgataaattacttaattaactctgagctgatgtatttgtcagctcaaaatagattttctccatcgataaacggaaatcaatgacttttccaaaactttctgggtatttttatttttccaaaacttatccaggccttgaaactgcattttttttttcaaaattgacttttccaggtttttcatgactgtatgaaccctgtaccTTCAATACTACTCTActtactggacactttattagaaccccctaccctgtgcttccactcattgaacaatttatttttaaacaaactacCTTGTACTTCTACACACTGGTCAGCTTATTGATAACCCTAACCTTGTGTTTTTattcaatggccactttattagaaacatccaaCTTTgtgattccactcactggccacctCATTAAAACCCCTTTGTTCTTTTTACTTATGTACAGTTACACAGCCGAGCCCATCTGCTGAGCCACTGAGCCCTTTAGACCTTAATTAGGGGTCAGTTTCTGACCTCATAGCTGCTCTTGTCCAGATATTTGTAGGTGTTGGACTTACTGTCAACCCAAGCAACATCTGACTTGTTTCAGCAGCACATACACATCAACACCACACCCCAATATCCAATAATATCTGCACAGTAGTGGTTCTATGGTCAGAAACTGCCCAGTGATgaatgagaaaaagaaggagGCTGACAAAGTGCAGCAATACAGCAACAATACTGATCATGAAGAGTTCCCTCAGGGAACAGCTTGAAAATAGCTATCCACTTATagcctgtataagttgtgaggttttatcatgtaagtgaggctgaacagtggccagtgtgctcatagcAAGGCAAAGGGAATTATGGAAGTCGAGGCGAGGTCTAGAGTCTAGGCGAGGTCTAGACAGTGGGTGCTGAttaatgggac
>TU47614
ttttttttttcaaaattgacttttccaggtttttcatgactgtatgaaccctgtaccTTCAATACTACTCTActtactggacactttattagaaccccctaccctgtgcttccactcattgaacaatttatttttaaacaaactacCTTGTACTTCTACACACTGGTCAGCTTATTGATAACCCTAACCTTGTGTTTTTattcaatggccactttattagaaacatccaaCTTTgtgattccactcactggccacctCATTAAAACCCCTTTGTTCTTTTTACTTATGTACAGTTACACAGCCGAGCCCATCTGCTGAGCCACTGAGCCCTTTAGACCTTAATTAGGGGTCAGTTTCTGACCTCATAGCTGCTCTTGTCCAGATATTTGTAGGTGTTGGACTTACTGTCAACCCAAGCAACATCTGACTTGTTTCAGCAGCACATACACATCAACACCACACCCCAATATCCAATAATATCTGCACAGTAGTGGTTCTATGGTCAGAAACTGCCCAGTGATgaatgagaaaaagaaggagGCTGACAAAGTGCAGCAATACAGCAACAATACTGATCATGAAGAGTTCCCTCAGGGAACAGCTTGAAAATAGCTATCCACTTATagcctgtataagttgtgaggttttatcatgtaagtgaggctgaacagtggccagtgtgctcatagcAAGGCAAAGGGAATTATGGAAGTCGAGGCGAGGTCTAGAGTCTAGGCGAGGTCTAGACAGTGGGTGCTGAttaatgggacattccatttccaaagatctgctgatatttaaaaaaaaaatttaaattgacTTTGAGTGtattaaaacgtgataaaaactacttacctttgataaatAGCCCACCTTCACTCTCCCGCAGCTATCTGAGAAACAaaattttgtgcactttgcccaaacaggcttttaaaTTGGATGATGCAGGGATACGGGATACATTCCTGGTGCCTGCAGATGAAagctttttccaccattattcaggctcaaaatagctccacacttcactggtaaaatccagagagccctgaca
>TU47615
CAGCCCTCAAGAAACTCGCGTATGGGTTGGTGTTGCGCTCTTAAATGGCTCGGCAGATTAGGAGGCTGAAAACATAATCTGACAGCAgacggagtccgagagagcacaactgatCACGCTCTTTCtgaggggtgggggggtgcATGGCGCACTCCTCCCTCATTACTTCCACTGTAATGCTGGATAGTACAGGCGTCTGTATACACAGGcatatacaaaattaaaaaatcctaataaacaatatttttatgttgtcACAAAGGCAAATATCTCTAGATCTTGAGAAACACTGTTATGATGTAAAATATGCAAATCCGTGGCCTATTTTGAGCTCACTTACAGTATATAAGAGTAGCAGTTTGATACATGCTCATGCATGGTTTTAGACTGGTGTAGATCTGGAATCTGAAGTGAACTGGAGAAGTGAGTTTTGTCTAtgggtgttttcacactagcACTacttggtccggttaaaacagaCCCCCTTAGTGCGGTTAAATTAAGATTGCGATTACTATCCCAAACtaactctggagcggtttgcttatggtgagaacatgatctggtctcgatccgacccagctattaaatatactccttttatttgacctaaactgctgataaggcgcagtttaatctgatatattagccagataacgccctattaaaaacactgtgtttaaaagcattacagcgttctgtgttaaagcagctctaaactgcacagatatacgtgctggaacacagaatcttctcactatatttactttcttgctcccgcaccagacagctctgaccaatcagaggagacaatgtgcttgcatggttttattggtgcgcattttgatGCAAtaaggtttatgcctgtgtgaaaccaaaccaaacagagggagaaacaaaAACTCATCTCCTGAtccggaccagagaaaccaactacaggtgtgaaaatgctctaaatgtgtAAATTGATGTCAATTTTAGCAGCCAAACAAactttcagctttcagttaaggCATCGTAGTAACTGTCTATGGcaagtgaaagtgtgtgtgtgtttgtgcgtgtgtgagtataaataaatgagctTGAGAGTtgccacttcattagaaactCCTACATTGTGCTTCTATTCCCTATTacttcagggttcatacactttttaaccaataaattttaatgattttccaggacttttccatgccttcaaggcaaatgtCAATGACCATGCGATTTTTAATACATCAGTGCAGATATAGACAgttaaaccaaaaatcaactaaaactatgatcgc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU47613 True 1993 lncRNA 0.39 1 8560680 8562672
TU47614 False 1057 lncRNA 0.41 1 8561903 8562959
TU47615 False 1292 lncRNA 0.40 1 8560361 8561652

Neighbor

gene id symbol gene type direction distance location
LOC103030936 bambi,bambia,LOC107749375,LOC107676764,LOC107584374,LOC108274338,LOC107549411 coding upstream 72910 8482871 ~ 8487451 (+)
ccdc57 ccdc57 coding upstream 158718 8361499 ~ 8401643 (+)
LOC103030301 csnk1db,LOC103030301,LOC108435268,LOC107566590,LOC107684056,LOC107702480,LOC107755503,LOC103369437 coding upstream 200108 8347603 ~ 8360253 (+)
LOC103035888 LOC107566522,LOC108435270,LOC107755508,LOC107684054,LOC108273414 coding upstream 278671 7583827 ~ 8281690 (+)
nog nog coding upstream 1085116 7472907 ~ 7475245 (+)
pald1 pald1 coding downstream 36223 8599182 ~ 8703597 (+)
LOC103023541 LOC108441018,LOC107709014,LOC107595168 coding downstream 431484 8994443 ~ 9029155 (+)
LOC103022911 LOC108413183 coding downstream 614279 9177238 ~ 9207684 (+)
LOC103043335 npffr1 coding downstream 657772 9220731 ~ 9267596 (+)
LOC103040920 sdk2,sdk2b coding downstream 1266526 9829485 ~ 10373341 (+)
G35361 NA non-coding upstream 12 8557236 ~ 8560349 (+)
G35359 NA non-coding upstream 7527 8552410 ~ 8552834 (+)
LOC111192363 NA non-coding upstream 69135 8474240 ~ 8491226 (+)
G35300 NA non-coding upstream 151751 8407480 ~ 8408610 (+)
G35299 NA non-coding upstream 152968 8406851 ~ 8407393 (+)
G35400 NA non-coding downstream 338226 8901185 ~ 8901451 (+)
G35454 NA non-coding downstream 466509 9029468 ~ 9033192 (+)
G35479 NA non-coding downstream 583412 9146371 ~ 9148165 (+)
G35495 NA non-coding downstream 646846 9209805 ~ 9210197 (+)
G35533 NA non-coding downstream 808611 9371570 ~ 9406210 (+)
LOC103037241 wac,waca,LOC107738973,LOC107665881,LOC107749376 other upstream 87372 8442132 ~ 8472989 (+)
fasn fasn other upstream 121496 8386173 ~ 8438865 (+)
G35021 NA other upstream 1656364 6902417 ~ 6903997 (+)
G34931 NA other upstream 1828937 6730954 ~ 6731424 (+)
LOC103029551 qki2,LOC103029551,LOC108426533,LOC107684089,LOC108274051,LOC107749853,LOC107755469 other upstream 1896754 6592607 ~ 6663607 (+)
LOC103024481 adamts14,LOC103367006 other downstream 156395 8719354 ~ 8851392 (+)
G35744 mrpl38 other downstream 1908421 10471380 ~ 10475783 (+)
dock1 dock1,LOC107740868 other downstream 2184678 10747637 ~ 11001805 (+)
G35903 NA other downstream 3238499 11801458 ~ 11802204 (+)
bnip3 bnip3,LOC107553688,LOC107653114,LOC107582186,LOC107706607 other downstream 3548731 12111690 ~ 12566941 (+)

Expression


Co-expression Network