G35369


Basic Information

Item Value
gene id G35369
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 8552415 ~ 8554828 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU47622
GTCCTCTGAGGAATTTACAGGCAGAACTACATactttttcactgaactccgcGGTCTGAACACATATTTAAGTTTTGTCACTTCGTGTTTactaaaatagctatttgtttaCTGctatgcaccgtaattacactttgaatGCTCGTTACCACGGAGATCcaagtaaacacaacagcgtggaaatggaggagctactgaacgtgatgtcatgtgattgagaaagcctaaaaactcactgttcctcctgttttttaaattgcagtccggatgcaagagttttatcactaagcagaagtgtgaaatacagtgtttttcacagacgtccccctaagAAAgaaatcccgtccggatagggcttatgatgtattcctggtacacatatGACACTACATTGCCATAAGCTTGCCTGCCAGTGTTCGGCCCcaatcacaagataacacctgacAACTTATATAGGTTTGGGTGTCCCCAAGCCAAGTTACCCCTAAGGTGATGGACAGtttatgatcagtttacatactggtAAGGTCACATGACTTTTGGTATGTCAGTGCATGTtgtgataaatataaatatctcaAGATCTGGAGAAAATAATTCAAATTTAATTCATTATCACAGAAATTTGAGTTCATACAATCTGCAATCCGTGTCCCGAGGCTTTTGTACACATGCTATGCTAAATGTACATTataaaaatgcacacacacacacacacactctggatCTGTCAATGAACTGAAAGAAAATCTTTGCTGTCTACCAGCAACAGGGCAGTGGAACCATAAGCCATTGTTGTGACAGGCGAGCTGAGTAAGCTGTTTCAGACACACTGATTTCTTTAGCAGAGGCTAACAGGATAATAAAAGCCTGTCAGCAGGCCAGACTGATCGACAGTGAGTTAGACAGAGTTCTAACTTCTTTCATTAGGTCTCGATAAGACCTCGCAACTTACACAGGTGTTCTAGTATGCCACACGGAAGGCAGTGCTGTTATTCACTATTTACCATCTGCTACAATTAGCTTGGAGTGAAGGTGTTTAGTAATCTCTAATAGACTtccttattatattatataacattcatgtacagctctggaaaaaacttaatataactccatataatcaagaggaggatggatgatcacaagccatcaacccaagctgaactgcttgaatttttgcaacaggagtggcattaactaatccaaaaacagtgtgtaagactggtggaggagaacatgccaaggtgcatgaaaactgaaattgttccaccaaacattgatttctgaactctttatgaatatcaacttgttttctttgaatcatttgttatttcggccatttctcattttctgcaaataaatgctttaaatgacaatatttttatttggaatttgggagaaatgttgtctgtagtttatagaataaaacaacaatgttggggcgctgagtggtccagcggtctaaagcgctgccactatgagcacaGGAATATGAGCActaggtcgcaggttcgaacccccgctcatgcagctttgccatcaagctgccggcgctcagaggaagcacaattggccctgctccctccgggtgggtagatggcacttttTCCACttatcactcctatggtgatgtctgcagaacagggcgtctgtgagctgttgtatcagaaccgatccgctgcgctttcctccaagcgcactggctgctcggcaatgctgtatcagcagcagcagcttgaaaagaagtaatagctggcttcacatgtatcggaggaggcatgtgttagtagtcttcaccctcctggtgtgttggggattatttgagtgggttgggtaatttggccgtgtaaattggggagaaaatgggataaaatttgaaataaaattatttaaaacaacaatattcattttactcaaacatatacctataaatagcaaaatcagagaaactgtttcagaaactgaaatgtttttttccagagctgttacAACACTGCTGTCTGTTAGCATGGACTAAAAGTTCCTTCCTGAAGTCTTTTGTTCACATCCCTATTATTTCTATTAGTTCTTAGCCACATTAGCatcgtagctccagtgctaaagaAACAAACTTGCCTAAGACACCAGACCCTCTAAATATGAGCAATATTTAAGTAAAGATTTCCAGAACAGACTTCTCATTGAACTATCACTTTTTAAAGAAAGGAGTAAATGCTGCTGTGTGAATATACTGTTCATATTTATtgaaagaaggagaaatatTTCACAGACAAGGTCAAGAGACTCTggttggagagagagatagacgtTTCACCATCGCTCTaatttttcactctctctctcgctctcttttctcCTTATTGTGCTGCTGTTTATCGAATGCACTGAACAATCACTCATCTGCCTCTTTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU47622 True 2414 lncRNA 0.40 1 8552415 8554828

Neighbor

gene id symbol gene type direction distance location
LOC111192402 NA coding downstream 18918 8532757 ~ 8533497 (-)
LOC103029555 slc16a3,mct4a,LOC103029555,LOC108435267,LOC107566576,LOC107581584,LOC107684059 coding downstream 176734 8362983 ~ 8375681 (-)
LOC103037651 c1qtnf1,LOC108435269,LOC107566571,LOC107702481,LOC107755506,LOC107722189 coding downstream 213794 8321249 ~ 8338621 (-)
LOC111192401 NA coding downstream 1201956 7348746 ~ 7350459 (-)
LOC103039244 if4ea,LOC108443564,LOC101071475,LOC107581637,LOC107684128 coding downstream 1280816 7267937 ~ 7271599 (-)
lrrc20 lrrc20 coding upstream 8195 8563023 ~ 8587186 (-)
nodal NA coding upstream 38748 8593576 ~ 8597809 (-)
LOC103024169 LOC108441016 coding upstream 312648 8867476 ~ 8887318 (-)
polr3a polr3a coding upstream 498135 9052963 ~ 9120420 (-)
LOC103043647 ttyh2,LOC107654552,LOC107684477 coding upstream 759756 9314584 ~ 9422711 (-)
G35341 NA non-coding downstream 70681 8467184 ~ 8481734 (-)
G35337 fasn,LOC107579490,LOC106632302 non-coding downstream 111142 8423951 ~ 8441273 (-)
G35306 csnk1db,LOC103030301,LOC103369437,LOC108435268 non-coding downstream 176385 8294830 ~ 8376030 (-)
G35310 NA non-coding downstream 216127 8319220 ~ 8336288 (-)
G35266 NA non-coding downstream 500762 8049542 ~ 8051653 (-)
G35371 NA non-coding upstream 76 8554904 ~ 8556983 (-)
G35368 NA non-coding upstream 6074 8560902 ~ 8562824 (-)
G35408 NA non-coding upstream 146779 8701607 ~ 8703531 (-)
G35411 NA non-coding upstream 157987 8712815 ~ 8713030 (-)
LOC111192365 NA non-coding upstream 263580 8818408 ~ 8865303 (-)
LOC103030829 NA other downstream 1856124 6688167 ~ 6696291 (-)
G34981 qki2,LOC103029551,LOC108426533 other downstream 1898830 6619680 ~ 6653585 (-)
ndufaf8 NA other downstream 2005833 6543144 ~ 6546582 (-)
G34953 NA other downstream 2011051 6537021 ~ 6541364 (-)
LOC103026268 bahcc1 other downstream 2038714 6366684 ~ 6513701 (-)
G35429 NA other upstream 370000 8924828 ~ 8927717 (-)
tbata NA other upstream 384105 8938933 ~ 9003896 (-)
G35512 NA other upstream 649742 9204570 ~ 9205911 (-)
rpl38 NA other upstream 871247 9426075 ~ 9431228 (-)
clrn3 NA other upstream 2498831 11053659 ~ 11083182 (-)

Expression


Co-expression Network