G35454


Basic Information

Item Value
gene id G35454
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 9029468 ~ 9033192 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU47751
cctatactacactataataccatatattgccctatactaccctattctccctatactaccatacactgtcctatactaccctatactccctatactaccatatactgtCCTGTACTCCCTAttctccctatactacactatactaccatacactgccccatactaccctatactacactatactattatatactgtcctgtactccctatactacactatactaccataCACTGCCCGATTCTATCCTGttctccctatactacactatactatcatatactgtCATGTATACCCTATTCTCCCTATATTACACTATGCTACCATAAACtgacctatactaccctactttcactatactaaactatacta
>TU47753
cctatactacactataataccatatattgccctatactaccctattctccctatactaccatacactgtcctatactaccctatactccctatactaccatatactgtCCTGTACTCCCTAttctccctatactacactatactaccatacactgccccatactaccctatactacactatactattatatactgtcctgtactccctatactacactatactaccataCACTGCCCGATTCTATCCTGttctccctatactacactatactatcatatactgtCATGTATACCCTATTCTCCCTATATTACACTATGCTACCATAAACtgacctatactaccctactttcactatactaaactatactaccATACACTGCCCTATACTACTCTTTACTGCCCTATACCTAAACTACACTATACCTCCCTATACTCCTTacagtacactatactaccatacactgccctatactccctatactagaCTACACAACCATAAACTGCCCTATTTTCACTATAATACACAACActaacctatactacccttcattgccctatactacactatacatcATGTCCCCTGTATTGCCCTATACCTACACTAGCCTATATTActctttactaccctatactcccttaaCTACACTATTCTTCCCTATACTCctcatactacactatactaccattcactgccctatactccctatactacacgatactaccatatactgtcctatactccctataatacacgatactaccatatactgtcctatactacactatacaaccATACACTGCCCCATACTACCCTATTTTCACTATACTACACAATACTACCATACACTgccccatactaccctatactccctatattacactatacatcATGTCCCCTGTATTGTCCTATACCTCCGTACACTAGCCTATATTTTGCACAAagttctattttatatttaccaGACAACTACAGAAACTCCAGGGCCAGGAAAGGTTTTGTTCTGACGACACTTCCGTGAAGGTCATCCGAATCTTTTCATATTTGTATCATCTTTCATATTTGATTTGTCTTTGTTTCTTGTCTTTctttgttaaatatttcaggccTGTGGTGTTTTTGTGCTTGTGCTGGAGTAAGACAGGAGAATGAAAGCTGCTGATCGATGCTTGTGCTGTATTGTGTTCTAAAGAGCTTCTGAAGTCCATGCATGAAGTGTAGCAAAGCTAATGTCCTACTTCTGAATCACCCCGGCTCTTTCAAAGAGCCCATCAAGCTGAGGCTATGGATGCAGATTAGAGTAAATAAGACTCTTGAAGATATTTTCAGAGGCGAGCCCACCTCACTGAGTGGCTTAGTGATGGCTGAGCCTCCAAACTAAGCTTCACATTACATATAACTACCAGCCTGTGTCACATTCATGCAAAATATGTTATGTATAAATGCTGCAATGAAAACTGTAGAGGGTATCCACCTGTTCCACTTGTAGGAACACCAGCAGGAACAATGGTACACTTGCAGGAATATGTTCTACGGTACACAAAGAGGAACACAAATCTCCTCCTGTAGGAGCTCTTGTATACCTACAGGAATATAGCTACACCTAAAGGAACCTTGAGACTCCTGTAGAAGCTCTGCTATACCTACAGGAACAAACCTACAGGAATATTTAGACTCCTGTAGAAGCTCTGATTTACCTACGGGAACATTGAAACTCCTGTAGAAGCTCTGGTAAACCAACAGGAACATTGAGACTCCTGTAGAAGCTCTGCTATATCTACAGGAACCAACCTACAGGAACATTGAGACTCCTGTAGAAGCTCTGCTACACCTACAGGAACATTGAGACTCCTGTAGAAGCTCTGCTACACCTACAGGAACATTGAGACTCCTGTAGAAGCTCTGCTACACCTACAGGAACattgaaactcctgtaaaagctctgctatACCTACAGGAACCAACCTACAGGAACAGGAACTAACCTACAGGAGACTCCTGTAGAAGCTCTGGTATACCTACAGGAACATTGAGACTCCTGTAGAAGCTCTGTTCTATCTACAGGAACCTTAAAACtcctgtaaaagctctgctacACCTACAGGAACATTGATACTTTTATAGAAGGTCTGGTATACCTACAGGAATCTTAAAACTCCTGTAGAAGCTCTGGTATACATACAAGGACAATTGCCTTTCACTAATTGCCCTAGTGAAACACTGGCACACCTACATGAACTACAGGAACACTTCAGAATGCTTATATACCAGCAGGAATGGTGGCACACCTACAGGAGCACTCGTATACCAGCAGGAACTCAGGCCTCGGACCTGGGACACATGCAAAACCAATGGTAGACATATCTGAAATGCTTATATGCTTACAGGAACACTTGTTGACCTGCAGGAACACTGAAACATCTGCAGGAACACTGGCAAACCTACATGAACATTTGCACATCTACGGAAAAAACTGGTAGACCTGGTACGCCAGGAGGAATGTTGGTAAACCCACATGAACATTTGTACACTTGTACATTACAAAGAGAATATTTTGTCTTGGATGCTGAGCGTTTTATAGGTTGATGTTTTGTTTCCTTCACCAATAAATCTCATTTGTATtctgtgtatattttgtatatatagtgtgtttttgtgcaaaTACATTTTGCAGGTGTGTtctgtatatactgtgtttgttttatttttttcagcagtggTTTACAACACGGCTCGGCTGAGGTGAGTTAGGCTGAAATGTGCTAAATGCGCTAAAATGTAACTGCTAGTATTGATCACAACCTCATTGTGATCCCACAGATCCAAATATTGAAATGgatgaaaaataaaagcaga

Function

GO:

id name namespace
GO:0035235 ionotropic glutamate receptor signaling pathway biological_process
GO:0007215 glutamate receptor signaling pathway biological_process

KEGG:

id description
ko04724 Glutamatergic synapse

RNA

RNA id representative length rna type GC content exon number start site end site
TU47751 False 370 lncRNA 0.37 2 9029468 9030561
TU47753 True 2855 lncRNA 0.40 3 9029468 9033192

Neighbor

gene id symbol gene type direction distance location
LOC103023541 LOC108441018,LOC107709014,LOC107595168 coding upstream 313 8994443 ~ 9029155 (+)
pald1 pald1 coding upstream 325871 8599182 ~ 8703597 (+)
LOC103030936 bambi,bambia,LOC107749375,LOC107676764,LOC107584374,LOC108274338,LOC107549411 coding upstream 542017 8482871 ~ 8487451 (+)
ccdc57 ccdc57 coding upstream 627825 8361499 ~ 8401643 (+)
LOC103030301 csnk1db,LOC103030301,LOC108435268,LOC107566590,LOC107684056,LOC107702480,LOC107755503,LOC103369437 coding upstream 669215 8347603 ~ 8360253 (+)
LOC103022911 LOC108413183 coding downstream 144046 9177238 ~ 9207684 (+)
LOC103043335 npffr1 coding downstream 187539 9220731 ~ 9267596 (+)
LOC103040920 sdk2,sdk2b coding downstream 796293 9829485 ~ 10373341 (+)
cdc42ep4 NA coding downstream 1351820 10385012 ~ 10424245 (+)
LOC103039374 NA coding downstream 1404131 10437323 ~ 10441938 (+)
G35400 NA non-coding upstream 128017 8901185 ~ 8901451 (+)
G35362 NA non-coding upstream 466509 8560361 ~ 8562959 (+)
G35361 NA non-coding upstream 469119 8557236 ~ 8560349 (+)
G35359 NA non-coding upstream 476634 8552410 ~ 8552834 (+)
LOC111192363 NA non-coding upstream 538242 8474240 ~ 8491226 (+)
G35479 NA non-coding downstream 113179 9146371 ~ 9148165 (+)
G35495 NA non-coding downstream 176613 9209805 ~ 9210197 (+)
G35533 NA non-coding downstream 338378 9371570 ~ 9406210 (+)
G35539 NA non-coding downstream 391783 9424975 ~ 9429378 (+)
G35552 NA non-coding downstream 420677 9453869 ~ 9454168 (+)
LOC103024481 adamts14,LOC103367006 other upstream 178076 8719354 ~ 8851392 (+)
LOC103037241 wac,waca,LOC107738973,LOC107665881,LOC107749376 other upstream 556479 8442132 ~ 8472989 (+)
fasn fasn other upstream 590603 8386173 ~ 8438865 (+)
G35021 NA other upstream 2125471 6902417 ~ 6903997 (+)
G34931 NA other upstream 2298044 6730954 ~ 6731424 (+)
G35744 mrpl38 other downstream 1438188 10471380 ~ 10475783 (+)
dock1 dock1,LOC107740868 other downstream 1714445 10747637 ~ 11001805 (+)
G35903 NA other downstream 2768266 11801458 ~ 11802204 (+)
bnip3 bnip3,LOC107553688,LOC107653114,LOC107582186,LOC107706607 other downstream 3078498 12111690 ~ 12566941 (+)
G35967 NA other downstream 3333348 12366540 ~ 12370962 (+)

Expression


Co-expression Network