G51036


Basic Information

Item Value
gene id G51036
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 1284860 ~ 1285420 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU58109
GACAAGGTTCTGGGAGGTCTGCTGAGACGTGACGTGGCTCTGGAAAATCTGCTGTGACTTGACTCACGAAGATCAACTGTGACTTGACTTGGCTCACGAAGATCAACTGTGACTTGACTTGGCTCAGGAATGGCGGCCATCTTGATTGGAGACTCAGACATGGCAGCCATGTTGTAAATGGGTTTTGAAGTGGCAGTCATGTTACAAACTGGCTCTGATGCAGGAACTACAGGAAGGGAAGGTACATATAACATAGGGCTAGCGCTCCTCCGAACTGGCCATGCTGGTGACTGTAATGGGCCAAGCTCCATGGCCACTGGAGCTTGGTGAGTGTTGCCCCTCCCCAAAAAGTGTTTAGGCAACGTGTCCTCCTCCACTTCACCCACAGTGAAGGGAGAACCACACAGTAGCAGGGCAAAGTCCAAGTACTGTACCAGGGTCCAGCCGGGACCTCCATCTGGCATCAGTTGAGCAATGTCATAATCCAGTCCACTCCAAAAACATTCAATAAGCATTACCTCATCCAATGGCGCAAGGTGGCAGTAAGTTATAAAGTTCTCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU58109 True 561 lncRNA 0.50 1 1284860 1285420

Neighbor

gene id symbol gene type direction distance location
CI01000009_01219880_01224537 NA coding upstream 59991 1219637 ~ 1224869 (+)
CI01000009_01183737_01206031 NA coding upstream 78003 1182091 ~ 1206857 (+)
CI01000009_01110684_01111118 NA coding upstream 173259 1110684 ~ 1111601 (+)
CI01000009_01034561_01035452 KLF12 coding upstream 249132 1034561 ~ 1035728 (+)
CI01000009_00920570_00955979 TBC1D4 coding upstream 328286 920428 ~ 956574 (+)
CI01000009_01351236_01380055 CLYBL coding downstream 65816 1351236 ~ 1380285 (+)
CI01000009_01402330_01407372 ZIC2A, ZIC2 coding downstream 115641 1401061 ~ 1407755 (+)
CI01000009_01431700_01434463 NA coding downstream 145430 1429873 ~ 1435328 (+)
CI01000009_01454610_01484907 NA coding downstream 168804 1453708 ~ 1485828 (+)
CI01000009_01570544_01595199 NA coding downstream 284659 1570079 ~ 1595466 (+)
G50961 NA non-coding upstream 67631 1211550 ~ 1217229 (+)
G50972 NA non-coding upstream 179568 1104628 ~ 1105292 (+)
G50951 NA non-coding upstream 180376 1103278 ~ 1104484 (+)
G51031 NA non-coding upstream 283638 1000996 ~ 1001222 (+)
G51028 NA non-coding upstream 288588 996044 ~ 996272 (+)
G51039 NA non-coding downstream 2780 1288200 ~ 1288672 (+)
G51041 NA non-coding downstream 5123 1290543 ~ 1290776 (+)
G51043 NA non-coding downstream 18179 1303599 ~ 1304068 (+)
G51059 NA non-coding downstream 66593 1352013 ~ 1352423 (+)
G50920 NA other upstream 514627 769841 ~ 770233 (+)
CI01000009_00094836_00095813 NA other upstream 1189073 94371 ~ 97230 (+)
G51122 NA other downstream 394726 1680146 ~ 1681966 (+)
CI01000009_01897343_01919208 PIKFYVE other downstream 608815 1897343 ~ 1919516 (+)
G51274 NA other downstream 969679 2255099 ~ 2350486 (+)
G51529 NA other downstream 1776613 3062033 ~ 3062587 (+)

Expression


Co-expression Network