rpl38


Basic Information

Item Value
gene id rpl38
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 9426075 ~ 9431228 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU47866
CAGAGCGGAAACCACGCCCCTTTTCCCCTCCGCTTGCAGGCTGTgTCCGGTCACGGTCAGATTGGAAAAATGccACGCAAAATTGAAGAAATCAAAGATTTCCTCCTGACAGCCAGGCGGAAGGATGCTAAGTCCGTCAAGATCAAGAAGAACAAGGACAATGTGAAGTTCAAGGTGCGCTGCAGCAGATTCCTGTACACACTGGTCATCACAGACAAGGAGAAGGCAGAGAAGCTCAAACAGTCCCTGCCACCAGgtcTGGCTGTTAAGGAGCTGAAGTAAATGTCTTGCTtgtacaaaatattgtaataaaaactGGGAAAACCAACATGTTGCTTTTCTGTTCCTTTTGTCTGTGGTAATGTGAAGCAGTGCAAATGATACTAATTTCAGTTT
>TU47867
CAGAGCGGAAACCACGCCCCTTTTCCCCTCCGCTTGCAGGCTGTgTCCGGTCACGGTCAGATTGGAAAAATGccACGCAAAATTGAAGAAATCAAAGATTTCCTCCTGACAGCCAGGCGGAAGGATGCTAAGTCCGTCAAGATCAAGAAGAACAAGGACAATGTGAAGTTCAAGGTGCGCTGCAGCAGATTCCTGTACACACTGGTCATCACAGACAAGGAGAAGGCAGAGAAGCTCAAACAGTCCCTGCCACCAGgtcTGGCTGTTAAGGAGCTGAAGTAAATGTCTTGCTtgtacaaaatattgtaataaaaactGGGAAAACCAACATGTTGCTTTTCTGTTCCTTTTGTCTGTGGTAATGTGAAGCAGTGCAAATGATACTAATTTCAGT
>TU47869
GTGGCTGTAGAGCTACTTCGCGAATTGTCCTCGTTGAGCCGCCGTAGCAACGCTTAAATACTGCCAGAGCGGAAACCACGCCCCTTTTCCCCTCCGCTTGCAGGCTGTgTCCGGTCACGGTCAGATTGGAAAAATGccACGCAAAATTGAAGAAATCAAAGATTTCCTCCTGACAGCCAGGCGGAAGGATGCTAAGTCCGTCAAGATCAAGAAGAACAAGGACAATGTGAAGTTCAAGGTGCGCTGCAGCAGATTCCTGTACACACTGGTCATCACAGACAAGGAGAAGGCAGAGAAGCTCAAACAGTCCCTGCCACCAGgtcTGGCTGTTAAGGAGCTGAAGTAAATGTCTTGCTtgtacaaaatattgtaataaaaactGGGAAAACCAACATGTTGCTTTTCTGTTCCTTTTGTCTGTGGTAATGTGAAGCAGTGCAAATGATACTAATTTCAGT
>XM_022669073.1
TCGTTGAGCCGCCGTAGCAACGCTTAAATACTGCCAGAGCGGAAACCACGCCCCTTTTCCCCTCCGCTTGCAGGCTGTgTCCGGTCACGGTCAGATTGGAAAAATGccACGCAAAATTGAAGAAATCAAAGATTTCCTCCTGACAGCCAGGCGGAAGGATGCTAAGTCCGTCAAGATCAAGAAGAACAAGGACAATGTGAAGTTCAAGGTGCGCTGCAGCAGATTCCTGTACACACTGGTCATCACAGACAAGGAGAAGGCAGAGAAGCTCAAACAGTCCCTGCCACCAGgtcTGGCTGTTAAGGAGCTGAAGTAAATGTCTTGCTtgtacaaaatattgtaataaaaactGGGAAAACCAA

Function

NR:

description
60S ribosomal protein L38

GO:

id name namespace
GO:0006614 SRP-dependent cotranslational protein targeting to membrane biological_process
GO:0034463 90S preribosome assembly biological_process
GO:0001501 skeletal system development biological_process
GO:0001503 ossification biological_process
GO:0042474 middle ear morphogenesis biological_process
GO:0006413 translational initiation biological_process
GO:0006414 translational elongation biological_process
GO:0006415 translational termination biological_process
GO:0006417 regulation of translation biological_process
GO:0007605 sensory perception of sound biological_process
GO:0019083 viral transcription biological_process
GO:0048318 axial mesoderm development biological_process
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay biological_process
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0033291 eukaryotic 80S initiation complex cellular_component
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU47866 False 396 TUCP 0.46 5 9426075 9431164
TU47867 False 394 TUCP 0.46 5 9426836 9431164
TU47869 True 458 TUCP 0.47 5 9426836 9431228
XM_022669073.1 False 362 mRNA 0.48 5 9426902 9431198

Neighbor

gene id symbol gene type direction distance location
LOC103043647 ttyh2,LOC107654552,LOC107684477 coding downstream 3364 9314584 ~ 9422711 (-)
polr3a polr3a coding downstream 305655 9052963 ~ 9120420 (-)
LOC103024169 LOC108441016 coding downstream 538757 8867476 ~ 8887318 (-)
nodal NA coding downstream 828266 8593576 ~ 8597809 (-)
lrrc20 lrrc20 coding downstream 838889 8563023 ~ 8587186 (-)
LOC103039991 LOC103039991 coding upstream 1012031 10443259 ~ 10450285 (-)
mrpl38 mrpl38 coding upstream 1036593 10467821 ~ 10475877 (-)
wbp2 wbp2,LOC107667802,LOC107578800 coding upstream 1055839 10487067 ~ 10494186 (-)
fam196a fam196a coding upstream 1396182 10827410 ~ 10880834 (-)
ebf3 ebf3,ebf3a,LOC107582179,LOC107745698 coding upstream 2465825 11897053 ~ 12038582 (-)
G35538 NA non-coding downstream 19863 9371369 ~ 9406212 (-)
G35536 NA non-coding downstream 112466 9310179 ~ 9313609 (-)
G35524 NA non-coding downstream 151983 9273712 ~ 9274092 (-)
G35501 NA non-coding downstream 286092 9139085 ~ 9139983 (-)
G35499 NA non-coding downstream 289878 9135489 ~ 9136197 (-)
LOC111192367 NA non-coding upstream 3520 9434748 ~ 9437143 (-)
trnap-cgg_1 NA non-coding upstream 22258 9453486 ~ 9453557 (-)
G35553 NA non-coding upstream 22641 9453869 ~ 9454177 (-)
G35559 NA non-coding upstream 29975 9461203 ~ 9461613 (-)
G35613 NA non-coding upstream 331123 9762351 ~ 9762600 (-)
G35512 NA other downstream 220164 9204570 ~ 9205911 (-)
tbata NA other downstream 422179 8938933 ~ 9003896 (-)
G35429 NA other downstream 498358 8924828 ~ 8927717 (-)
LOC103030829 NA other downstream 2729784 6688167 ~ 6696291 (-)
G34981 qki2,LOC103029551,LOC108426533 other downstream 2772490 6619680 ~ 6653585 (-)
clrn3 NA other upstream 1622431 11053659 ~ 11083182 (-)
LOC103036331 NA other upstream 2636305 12067533 ~ 12072427 (-)
G36074 NA other upstream 3278580 12709808 ~ 12711545 (-)
lsm5 lsm5,LOC107653262,LOC107727957,LOC107674592 other upstream 3875860 13307088 ~ 13311525 (-)
p4ha1 p4ha1,p4ha1a,LOC107753313,LOC108273903,LOC107560551,LOC107684765 other upstream 4043938 13475166 ~ 13500177 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location