G51039


Basic Information

Item Value
gene id G51039
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 1288200 ~ 1288672 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU58112
GGAAAGTTCAATACTCTTACTTCCAGTGTTGGGGGAAACGCATTACAACTTGTGTTACGTAATCAGATTACTGTTTCAAGTAACTAGTAAAGTATTGCATAACTTTTTCAATTCACAACAAAATATCTAAGTTACTTTTTCAAATAAGTAACGCAAGTTACTTTTTCACATTTATTGACTGACAGCTCTCCTGTCCCCGTGTTGAGAGAAATAAAGTACATAGGTGTTGTGCACGATGTGTGAACATGGTTATTGTAGATCTAGACTAAATGTGAACATGCGTTTAATCATCTCACTTGCACGAAAACATTCAGTATTCCTCAAAATGAATAAAAACAGTGAAATGCAATCTCAGAATTTTATGCAAACCTGTAATAATTAACTATATTAAATTACACAAATATACTTTATGTATTTAATCTCACTTTATTAACCAACGTCTTTGCTGCTGACCTTCAATGATCTAATTCAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU58112 True 473 lncRNA 0.34 1 1288200 1288672

Neighbor

gene id symbol gene type direction distance location
CI01000009_01219880_01224537 NA coding upstream 63331 1219637 ~ 1224869 (+)
CI01000009_01183737_01206031 NA coding upstream 81343 1182091 ~ 1206857 (+)
CI01000009_01110684_01111118 NA coding upstream 176599 1110684 ~ 1111601 (+)
CI01000009_01034561_01035452 KLF12 coding upstream 252472 1034561 ~ 1035728 (+)
CI01000009_00920570_00955979 TBC1D4 coding upstream 331626 920428 ~ 956574 (+)
CI01000009_01351236_01380055 CLYBL coding downstream 62564 1351236 ~ 1380285 (+)
CI01000009_01402330_01407372 ZIC2A, ZIC2 coding downstream 112389 1401061 ~ 1407755 (+)
CI01000009_01431700_01434463 NA coding downstream 142178 1429873 ~ 1435328 (+)
CI01000009_01454610_01484907 NA coding downstream 165552 1453708 ~ 1485828 (+)
CI01000009_01570544_01595199 NA coding downstream 281407 1570079 ~ 1595466 (+)
G51036 NA non-coding upstream 2780 1284860 ~ 1285420 (+)
G50961 NA non-coding upstream 70971 1211550 ~ 1217229 (+)
G50972 NA non-coding upstream 182908 1104628 ~ 1105292 (+)
G50951 NA non-coding upstream 183716 1103278 ~ 1104484 (+)
G51031 NA non-coding upstream 286978 1000996 ~ 1001222 (+)
G51041 NA non-coding downstream 1871 1290543 ~ 1290776 (+)
G51043 NA non-coding downstream 14927 1303599 ~ 1304068 (+)
G51059 NA non-coding downstream 63341 1352013 ~ 1352423 (+)
G50937 NA non-coding downstream 157923 1446595 ~ 1480466 (+)
G50920 NA other upstream 517967 769841 ~ 770233 (+)
CI01000009_00094836_00095813 NA other upstream 1192413 94371 ~ 97230 (+)
G51122 NA other downstream 391474 1680146 ~ 1681966 (+)
CI01000009_01897343_01919208 PIKFYVE other downstream 605563 1897343 ~ 1919516 (+)
G51274 NA other downstream 966427 2255099 ~ 2350486 (+)
G51529 NA other downstream 1773361 3062033 ~ 3062587 (+)

Expression


Co-expression Network