G35677


Basic Information

Item Value
gene id G35677
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 10081497 ~ 10083088 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU48011
CGACTCCCAACACCTCTAACTCTAGAATTTAACTCTTAACCCTCTCTTAGACCTGTCTAACTCTAGAACTTAACTCTTAACCCTCCCCTAGACCTGTTACCCGACTCCCAACACCTCTAACTCTAGAACTTAACTCTTAACCCTCTCCTAGACCTGTTACCCGACTCCCAACACCTCTAACTCTATCACTTAACTCTTAACCCTCTTCCTAGACCTGTTACCCGACTCCCAACACCTCTAACTCTAGAATTTAACTCTTAACCCTCTCCTAGACCTGTCTAACTCTAGAACTTAACTCTTAACCCTCTCCTAGACCTGTTACCCGACTCCCAACACCTCTAACTCTAGAATTTAACTCTTAACCCTCTCCTAGACCTGTCTAACTCTAGAACTTAACTCTTAACCCTCCCCTAGACCTGTTACCTGACTCGCAACACCTCTAACTCTAGAACTTAACTCTTAACCCTCCCCTAGACCTGTTACCCGACTCCCAACACCTCTAACTCTGCAACTTCACTCTTAACCCTCCCCTAGACCTGTTACCCGACTCCCAACACCTCTAACTCTAGAACTTAACTCTTAACCCTCCCCTAGACCTGTTACCCGACTCCCAACACCTCTAACTCTAGAACTTAACTCTTAACCCTCTCCTAGACCTGTCTAACTCTAGAACTTAACTCTTAACCCTCCTCTAGAACTGTTACCTGACTCCCAACACCTCAAACTCTATAACTTAATGCTTAACCCTCTCCTAGACCTGTTACCTGACTCCCAACACCTCTAACTCTGTAACTTCACTCTTAACCCTCTCCTAGTCCTGTCCTGATACCTCGACTCAACCCAACTCACTTTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU48011 True 853 lncRNA 0.46 2 10081497 10083088

Neighbor

gene id symbol gene type direction distance location
LOC103043335 npffr1 coding upstream 813901 9220731 ~ 9267596 (+)
LOC103022911 LOC108413183 coding upstream 873813 9177238 ~ 9207684 (+)
LOC103023541 LOC108441018,LOC107709014,LOC107595168 coding upstream 1052342 8994443 ~ 9029155 (+)
pald1 pald1 coding upstream 1377900 8599182 ~ 8703597 (+)
LOC103030936 bambi,bambia,LOC107749375,LOC107676764,LOC107584374,LOC108274338,LOC107549411 coding upstream 1594046 8482871 ~ 8487451 (+)
cdc42ep4 NA coding downstream 301924 10385012 ~ 10424245 (+)
LOC103039374 NA coding downstream 354235 10437323 ~ 10441938 (+)
trim65 trim65 coding downstream 393302 10476390 ~ 10485798 (+)
foxi2 foxi2 coding downstream 957610 11040698 ~ 11042893 (+)
ptpre ptpre,LOC103359937,LOC107387775 coding downstream 1101802 11184890 ~ 11217372 (+)
G35645 NA non-coding upstream 121630 9959325 ~ 9959867 (+)
G35621 NA non-coding upstream 246781 9833163 ~ 9834716 (+)
G35609 NA non-coding upstream 375195 9706049 ~ 9706302 (+)
G35554 NA non-coding upstream 626680 9454482 ~ 9454817 (+)
G35552 NA non-coding upstream 627329 9453869 ~ 9454168 (+)
G35748 NA non-coding downstream 404027 10487115 ~ 10488053 (+)
G35794 NA non-coding downstream 650690 10733778 ~ 10734007 (+)
G35810 NA non-coding downstream 764799 10847887 ~ 10848371 (+)
G35825 NA non-coding downstream 995784 11078872 ~ 11079443 (+)
LOC103033033 NA non-coding downstream 1007204 11090292 ~ 11264386 (+)
LOC103024481 adamts14,LOC103367006 other upstream 1230105 8719354 ~ 8851392 (+)
LOC103037241 wac,waca,LOC107738973,LOC107665881,LOC107749376 other upstream 1608508 8442132 ~ 8472989 (+)
fasn fasn other upstream 1642632 8386173 ~ 8438865 (+)
G35021 NA other upstream 3177500 6902417 ~ 6903997 (+)
G34931 NA other upstream 3350073 6730954 ~ 6731424 (+)
G35744 mrpl38 other downstream 388292 10471380 ~ 10475783 (+)
dock1 dock1,LOC107740868 other downstream 664549 10747637 ~ 11001805 (+)
G35903 NA other downstream 1718370 11801458 ~ 11802204 (+)
bnip3 bnip3,LOC107553688,LOC107653114,LOC107582186,LOC107706607 other downstream 2028602 12111690 ~ 12566941 (+)
G35967 NA other downstream 2283452 12366540 ~ 12370962 (+)

Expression


Co-expression Network