G35769


Basic Information

Item Value
gene id G35769
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 10461604 ~ 10463000 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU48126
gagagtgacccattctttcactaatatttgtagaagcagtctgcatgcctagggacttgattttatacacctgtagCCATGGAAGTGACTGGAACCTGACTTTAATGATTTAAAAGGATGAGCGAAAACTTTTCTCAATATATATGTGTACAGTGTATTATCTCAAACCACAGTAATATGTTAcaagtatgtttattatttgcttattcacaaattaatgtttatttctgtaACTAACCTGTTTGCATgtgatatttttaaagaaaagggaTAGGATTGAAAGTACAATGCGTACCATTGCTAATCGTGCCCGTCCTGAACAAACCTTGAGAGGAGGCTCTTCATTTGAAGGGCCCTCTCCAATGACTCATCTGCGTAATATGAAAGAGGTAGCAGAGCATTTCAGACTGACCTTCAGGGAGTGGCACGAGGAGCAGGAGGATGTTACTTTTCTTCTGCATCACATTCACGTCTTTGATGACCTCCTGAGGGCAAGAGCTGAAGTTCACAGGATCAAAGGCACAATAACTCACGTGTACTCTACACAAAGATTCTAGTGGACATCATCCATGTTCATCATCCC
>TU48127
AACGCTTCATCAGTGTCTTTCTGGGTTGTCCTGACTCAAGAACTCGGGCAGCACATGCTCGTACAGCGCACACTTTTAAACCAACTCATCTTATTGCATCCCATGAAGTCCCAATGGTACTTCTTAACATGAAAattgataaagagagagacccAACGAGAAAGAGGGCTCTACAGAGAGATTATGTCAACCATCGACAGGAGGATGTTACTTTTCTTCTGCATCACATTCACGTCTTTGATGACCTCCTGAGGGCAAGAGCTGAAGTTCACAGGATCAAAGGCACAATAACTCACGTGTACTCTACACAAAGATTCTAGTGGACATCATCCATGTTCATCATCCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU48126 True 583 lncRNA 0.40 3 10461604 10462439
TU48127 False 346 lncRNA 0.44 3 10461604 10463000

Neighbor

gene id symbol gene type direction distance location
LOC103039991 LOC103039991 coding downstream 11319 10443259 ~ 10450285 (-)
LOC103043647 ttyh2,LOC107654552,LOC107684477 coding downstream 1038893 9314584 ~ 9422711 (-)
polr3a polr3a coding downstream 1341184 9052963 ~ 9120420 (-)
LOC103024169 LOC108441016 coding downstream 1574286 8867476 ~ 8887318 (-)
nodal NA coding downstream 1863795 8593576 ~ 8597809 (-)
mrpl38 mrpl38 coding upstream 4821 10467821 ~ 10475877 (-)
wbp2 wbp2,LOC107667802,LOC107578800 coding upstream 24067 10487067 ~ 10494186 (-)
fam196a fam196a coding upstream 364410 10827410 ~ 10880834 (-)
ebf3 ebf3,ebf3a,LOC107582179,LOC107745698 coding upstream 1434053 11897053 ~ 12038582 (-)
tcerg1l tcerg1l coding upstream 1780281 12243281 ~ 12417270 (-)
G35767 NA non-coding downstream 20031 10439531 ~ 10441573 (-)
G35717 NA non-coding downstream 413508 9995305 ~ 10048096 (-)
G35615 NA non-coding downstream 678596 9781739 ~ 9783008 (-)
G35613 NA non-coding downstream 699004 9762351 ~ 9762600 (-)
G35559 NA non-coding downstream 999991 9461203 ~ 9461613 (-)
LOC111192368 NA non-coding upstream 2055 10465055 ~ 10466222 (-)
G35777 NA non-coding upstream 22987 10485987 ~ 10486376 (-)
G35855 dock1,LOC107711371,LOC107740868 non-coding upstream 479508 10942508 ~ 10967368 (-)
LOC111192403 NA non-coding upstream 482663 10945663 ~ 11004322 (-)
G35857 NA non-coding upstream 521527 10984527 ~ 11069095 (-)
rpl38 NA other downstream 1030376 9426075 ~ 9431228 (-)
G35512 NA other downstream 1255693 9204570 ~ 9205911 (-)
tbata NA other downstream 1457708 8938933 ~ 9003896 (-)
G35429 NA other downstream 1533887 8924828 ~ 8927717 (-)
LOC103030829 NA other downstream 3765313 6688167 ~ 6696291 (-)
clrn3 NA other upstream 590659 11053659 ~ 11083182 (-)
LOC103036331 NA other upstream 1604533 12067533 ~ 12072427 (-)
G36074 NA other upstream 2246808 12709808 ~ 12711545 (-)
lsm5 lsm5,LOC107653262,LOC107727957,LOC107674592 other upstream 2844088 13307088 ~ 13311525 (-)
p4ha1 p4ha1,p4ha1a,LOC107753313,LOC108273903,LOC107560551,LOC107684765 other upstream 3012166 13475166 ~ 13500177 (-)

Expression


Co-expression Network