LOC103033033


Basic Information

Item Value
gene id LOC103033033
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 11090292 ~ 11264386 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU48203
CCCCGGTCAGCGCGGGACTCAGCCTCGGTAGCGAGCAGCTGATCTGCTGGATCTGATCTGCTGGATCTGATCTGCTGGTTCTGATCTGCTGGATCTGATCTGCTGGTTCTGATCTGGATGGTGGTGGATCTTCTGGTCTGAGCGGATCTGGGACGCAGGGAGGAGGAATACGCATGCTGGGCTTTAACCAGGAGGGAATACCGCACAGGTGGTGGGTGGACGTCATGCCTCACTGTAAATCACCTGACCGCTATCTCCGTGCCCTGCTGTAGCCACGGCAACCCAGCCGCCTCCAGAGATCATCTTCAGCGgtggTAAAGCGCTGCTTTAAGAGCAGGATCCGTCTGGAAAGGTGCCACACCTGTACAGGAGCCTGTAGAATCAGGGCAGAACGAGGGATACAAGACGCCGGtgaaggaggaagagaagaagaagagaagggaTTGGGTGATATCTTCTACAGTCTGCTGACagaagagacagagcgagagaaagagagagagagagagagagagagagagagagagagagagagagg
>XR_002649871.1
agagagccgcCTCTCCGTCCAGCAGCGGCAGCGGCGGTTCAGTTCAGCTCAGTTCAGTCCCGCCCAGGATCAGCCCTCCCCGGTCAGCGCGGGACTCAGCCTCGGTAGCGAGCAGCTGATCTGCTGGATCTGATCTGCTGGATCTGATCTGCTGGTTCTGATCTGCTGGATCTGATCTGCTGGTTCTGATCTGGATGGTGGTGGATCTTCTGGTCTGAGCGGATCTGGGACGCAGGGAGGAGGAATACGCATGCTGGGCTTTAACCAGGAGGGAATACCGCACAGGTGGTGGGTGGACGTCATGCCTCACTGTAAATCACCTGACCGCTATCTCCGTGCCCTGCTGTAGCCACGGCAACCCAGCCGCCTCCAGAGATCATCTTCAGCGgtggTAAAGCGCTGCTTTAAGAGCAGGATCCGTCTGGAAAGGTGCCACACCTGTACAGGAGCCTGTAGAATCAGGGCAGAACGAGGGATACAAGACGCCGGtgaaggaggaagagaagaagaagagaagggaTTGGGTGATATCTTCTACAGTCTGCTGACagaagagacagagcgagagaaagagagagagagagagaggccggAGAGCCGGAGAGAACCGGTGAAGCGATGTGACAGCTGGTATCTTCCAGCAGAACGCCGGATATGATGGACATCAGGATCAGCAGGCAGTGAATCTCCTCTCTTATCAGaaACGATGGTCCCGGTTCTGTTTTTGGTAGCCACAACGCTATCAAAATACCTCCCAGAACATAAACAGCACAAACAACTTCAGCTTATTCCCCAGCTCTCACATCCTCCTGCCCACACTGCTGGTGCTCTCACTACTACTGCTCATCATCACCCTGCTCACCTGCT

Function

GO:

id name namespace
GO:0048483 autonomic nervous system development biological_process
GO:0048484 enteric nervous system development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU48203 False 538 lncRNA 0.55 4 11090369 11264386
XR_002649871.1 True 867 lncRNA 0.55 5 11090292 11184100

Neighbor

gene id symbol gene type direction distance location
foxi2 foxi2 coding upstream 47399 11040698 ~ 11042893 (+)
trim65 trim65 coding upstream 604494 10476390 ~ 10485798 (+)
LOC103039374 NA coding upstream 648354 10437323 ~ 10441938 (+)
cdc42ep4 NA coding upstream 666047 10385012 ~ 10424245 (+)
LOC103040920 sdk2,sdk2b coding upstream 716951 9829485 ~ 10373341 (+)
glrx3 glrx3,LOC107745700 coding downstream 808977 12073363 ~ 12094731 (+)
jakmip3 jakmip3 coding downstream 1339571 12603957 ~ 12664928 (+)
dpysl4 dpysl4,LOC107653119,LOC107706606,LOC107582189,LOC107654562,LOC107568139 coding downstream 1407159 12671545 ~ 12692068 (+)
LOC103039392 chmp6b,chmp6,LOC108429718,LOC107749864,LOC107684156,LOC107755461,LOC107690936 coding downstream 1439952 12704338 ~ 12710368 (+)
LOC103024023 LOC108273716,LOC108429130,LOC107690938 coding downstream 1453267 12717653 ~ 12831319 (+)
G35825 NA non-coding upstream 10849 11078872 ~ 11079443 (+)
G35810 NA non-coding upstream 241921 10847887 ~ 10848371 (+)
G35794 NA non-coding upstream 356285 10733778 ~ 10734007 (+)
G35748 NA non-coding upstream 602239 10487115 ~ 10488053 (+)
G35677 NA non-coding upstream 1007204 10081497 ~ 10083088 (+)
LOC111192404 NA non-coding downstream 176026 11440412 ~ 11442668 (+)
G35908 NA non-coding downstream 557506 11821892 ~ 11822308 (+)
G35912 NA non-coding downstream 585146 11849532 ~ 11849748 (+)
G35913 NA non-coding downstream 586738 11851124 ~ 11851340 (+)
G35931 NA non-coding downstream 805809 12070195 ~ 12072400 (+)
dock1 dock1,LOC107740868 other upstream 88487 10747637 ~ 11001805 (+)
G35744 mrpl38 other upstream 614509 10471380 ~ 10475783 (+)
LOC103024481 adamts14,LOC103367006 other upstream 2238900 8719354 ~ 8851392 (+)
LOC103037241 wac,waca,LOC107738973,LOC107665881,LOC107749376 other upstream 2617303 8442132 ~ 8472989 (+)
fasn fasn other upstream 2651427 8386173 ~ 8438865 (+)
G35903 NA other downstream 537072 11801458 ~ 11802204 (+)
bnip3 bnip3,LOC107553688,LOC107653114,LOC107582186,LOC107706607 other downstream 847304 12111690 ~ 12566941 (+)
G35967 NA other downstream 1102154 12366540 ~ 12370962 (+)
G35995 NA other downstream 1437919 12702305 ~ 12703056 (+)
LOC103039668 LOC108435045 other downstream 2237860 13502246 ~ 13520702 (+)

Expression


Co-expression Network