Gene
RNA
| Item | Value |
|---|---|
| gene id | G51043 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000009 |
| NCBI id | null |
| chromosome length | 16003125 |
| location | 1303599 ~ 1304068 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU58116 | True | 470 | lncRNA | 0.53 | 1 | 1303599 | 1304068 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000009_01219880_01224537 | NA | coding | upstream | 78730 | 1219637 ~ 1224869 (+) |
| CI01000009_01183737_01206031 | NA | coding | upstream | 96742 | 1182091 ~ 1206857 (+) |
| CI01000009_01110684_01111118 | NA | coding | upstream | 191998 | 1110684 ~ 1111601 (+) |
| CI01000009_01034561_01035452 | KLF12 | coding | upstream | 267871 | 1034561 ~ 1035728 (+) |
| CI01000009_00920570_00955979 | TBC1D4 | coding | upstream | 347025 | 920428 ~ 956574 (+) |
| CI01000009_01351236_01380055 | CLYBL | coding | downstream | 47168 | 1351236 ~ 1380285 (+) |
| CI01000009_01402330_01407372 | ZIC2A, ZIC2 | coding | downstream | 96993 | 1401061 ~ 1407755 (+) |
| CI01000009_01431700_01434463 | NA | coding | downstream | 126782 | 1429873 ~ 1435328 (+) |
| CI01000009_01454610_01484907 | NA | coding | downstream | 150156 | 1453708 ~ 1485828 (+) |
| CI01000009_01570544_01595199 | NA | coding | downstream | 266011 | 1570079 ~ 1595466 (+) |
| G51041 | NA | non-coding | upstream | 12823 | 1290543 ~ 1290776 (+) |
| G51039 | NA | non-coding | upstream | 14927 | 1288200 ~ 1288672 (+) |
| G51036 | NA | non-coding | upstream | 18179 | 1284860 ~ 1285420 (+) |
| G50961 | NA | non-coding | upstream | 86370 | 1211550 ~ 1217229 (+) |
| G50972 | NA | non-coding | upstream | 198307 | 1104628 ~ 1105292 (+) |
| G51059 | NA | non-coding | downstream | 47945 | 1352013 ~ 1352423 (+) |
| G50937 | NA | non-coding | downstream | 142527 | 1446595 ~ 1480466 (+) |
| G51062 | NA | non-coding | downstream | 178650 | 1482718 ~ 1482952 (+) |
| G50920 | NA | other | upstream | 533366 | 769841 ~ 770233 (+) |
| CI01000009_00094836_00095813 | NA | other | upstream | 1207812 | 94371 ~ 97230 (+) |
| G51122 | NA | other | downstream | 376078 | 1680146 ~ 1681966 (+) |
| CI01000009_01897343_01919208 | PIKFYVE | other | downstream | 590167 | 1897343 ~ 1919516 (+) |
| G51274 | NA | other | downstream | 951031 | 2255099 ~ 2350486 (+) |
| G51529 | NA | other | downstream | 1757965 | 3062033 ~ 3062587 (+) |
