G52102


Basic Information

Item Value
gene id G52102
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 1305269 ~ 1315480 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU59365
ACCATTTTACTTTCTACCAAATCTGATACAGCAGCAGCAGCATTATTTGATGCCACTGTAAATCATGAAAAAAGTGGGTAATGGCTATTGAAAGAAGCTGAATGTTATGATTTGATGTCCTGTAAGAATATATAGAATACATAGAGTAGCTCTTGACCGCCTTTGTTCTCTTTGGTCTGCCCTGGTACAAATGGACAATGAATCAGCAGGGTTTGGTGTCTTGGATGTCTGGTTGATTGAAAATCTTGAAATAGTGCCAACTCTGAAGCTGGATATTAAAGAACAAAACATGGACAAAATGTATGGATGGAAAGTCACATTCTAACTCTGGCATTTCAAGTAATCAAAAGTTCTACACACGTGCGGTCTTCACAAATACAGGAAATATACATCATGTAAGAAGACAAGTGGCCAAGTGCAAATACCAGAAGTGTGGGCATTGGGACAGTCCCTATAAAGGCCAGCGGACAAGTGTGAGCAGAAGAGCACAGAAGAAACCTCTTTCATAGTAGAGGTTCAGGATGAAAAGTGTATTTGTGTGGATTTGAAGACGTCTTTACGGACCAGCCTCCACCCTGCATTCCGCATGGGCATCCTCTTGGAAAATGGCATAAGGTTTACAAAACATCATTGTGGCTGTGGCACCAATTACTGTTAATATATGTCAAATGGCTAAAGCAGAGGCTTAGAAGCAGACTGATCACTCCGATAACGCCAACTGTCACTCCGTTAGCCGCAGAGCAGCCCCACTGGAATAATTAGTCCACTCTCTGTGAATAAAACAATATGAAAACAGCCAAATTGACATCCAAAATATGGGCTTTGCCTCAGATGACCTGAAAACAGGCTATCCCATATAGACTAAGTACAAAGGCAACATCTTCAAACACAGAATTACATCAATACTGATTCCCCATATATTCATTTTATATTCATTTAATGAAAATCAAATTGGATCCTGCTAGTGGGGAAAGCATATCACAGTTCTTTGCTTTTTAACAGGCAAAAGTTTTTGGAATTATAACTTATAAAATGAACATAGATTAGATAACTATACTGACTTAAAAGTGTTTCTTGAACAAATGCAAAGGAAATGAAAAAAAGATCCACTGACATAAAACAGTATAAAAATAATGTAATTTAGCTAAAAGGCTAAGAGAAGTATTTATAACAGTATTGAAGAATTACATGTAAATGCGAATCTTAAATGATTAAATTACTTAAATGAAAGCTCTAGCACCAAATACATACATTACAGCCATTTTTCATCAGTAAATTCTTCCAAACA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU59365 True 1288 lncRNA 0.37 3 1305269 1315480

Neighbor

gene id symbol gene type direction distance location
CI01000009_01293719_01294750 NA coding downstream 10306 1292716 ~ 1294963 (-)
CI01000009_01264011_01272894 GPR183A coding downstream 31929 1263607 ~ 1273340 (-)
CI01000009_01257207_01258196 GPR18 coding downstream 47073 1256477 ~ 1258196 (-)
CI01000009_01208525_01212914 NA coding downstream 90752 1208374 ~ 1214517 (-)
CI01000009_01138569_01164523 NA coding downstream 140732 1138249 ~ 1164537 (-)
CI01000009_01327537_01337349 NA coding upstream 11832 1327312 ~ 1337846 (-)
CI01000009_01386589_01389680 NA coding upstream 70897 1383864 ~ 1390149 (-)
CI01000009_01394603_01397604 ZIC5 coding upstream 79078 1394558 ~ 1398473 (-)
CI01000009_01423940_01424233 NA coding upstream 108231 1423711 ~ 1424573 (-)
CI01000009_01541031_01546978 NA coding upstream 225414 1540894 ~ 1547804 (-)
G52096 NA non-coding downstream 21362 1283543 ~ 1283907 (-)
G51951 NA non-coding downstream 35244 1267951 ~ 1270025 (-)
G52094 NA non-coding downstream 38657 1266178 ~ 1266612 (-)
G52091 NA non-coding downstream 61025 1242744 ~ 1244244 (-)
G52089 NA non-coding downstream 63662 1241261 ~ 1241607 (-)
G52160 NA non-coding upstream 110594 1426074 ~ 1431565 (-)
G52157 NA non-coding upstream 131014 1446494 ~ 1450926 (-)
G52244 NA non-coding upstream 373592 1689072 ~ 1703392 (-)
G52267 NA non-coding upstream 577499 1892979 ~ 1893288 (-)
G52098 NA other upstream 86452 1401932 ~ 1407627 (-)
G52410 NA other upstream 1236244 2551724 ~ 2562533 (-)
CI01000009_02885473_02893975 NA other upstream 1568208 2883688 ~ 2893975 (-)
CI01000009_03261739_03262843 NA other upstream 1945723 3261038 ~ 3262843 (-)

Expression


Co-expression Network