G35908


Basic Information

Item Value
gene id G35908
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 11821892 ~ 11822308 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU48308
AAAACAGCATAGCTACACCTCCACCTTTCTTGCCGGTACgtgagacatttaaaaagttaaagtttggtggagccgACTCAATTAATACACTTTCAGCACTACAAGAATTTAACCATGTctctgttaaaaacagaaaatcaagcccataatttgtaataaaatcattaattagaTAGGACTTGTTTGTAAGAGATCTGATATTTAGTAGAGCTAACTTAATAACCTGTGCATTTTGTTCCAAAGACTGTGGGTTACAATTTATATACTGCAAGTTGGATATATTCACATTATCTGACCTATACTCTCTGTTCTTTCTGCTTCTGATAAGAACTGGAATGGGGGAGATAACTGGCACACAGGGTCCGTACTTGTTTTGAAAACATGTACTGCTGACTTCACCATTGTAGCAGCACGGAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU48308 True 417 lncRNA 0.37 1 11821892 11822308

Neighbor

gene id symbol gene type direction distance location
ptpre ptpre,LOC103359937,LOC107387775 coding upstream 604520 11184890 ~ 11217372 (+)
foxi2 foxi2 coding upstream 778999 11040698 ~ 11042893 (+)
trim65 trim65 coding upstream 1336094 10476390 ~ 10485798 (+)
LOC103039374 NA coding upstream 1379954 10437323 ~ 10441938 (+)
cdc42ep4 NA coding upstream 1397647 10385012 ~ 10424245 (+)
glrx3 glrx3,LOC107745700 coding downstream 251055 12073363 ~ 12094731 (+)
jakmip3 jakmip3 coding downstream 781649 12603957 ~ 12664928 (+)
dpysl4 dpysl4,LOC107653119,LOC107706606,LOC107582189,LOC107654562,LOC107568139 coding downstream 849237 12671545 ~ 12692068 (+)
LOC103039392 chmp6b,chmp6,LOC108429718,LOC107749864,LOC107684156,LOC107755461,LOC107690936 coding downstream 882030 12704338 ~ 12710368 (+)
LOC103024023 LOC108273716,LOC108429130,LOC107690938 coding downstream 895345 12717653 ~ 12831319 (+)
LOC111192404 NA non-coding upstream 379224 11440412 ~ 11442668 (+)
G35834 NA non-coding upstream 556912 11156376 ~ 11264980 (+)
LOC103033033 NA non-coding upstream 557506 11090292 ~ 11264386 (+)
G35832 NA non-coding upstream 621708 11114649 ~ 11200184 (+)
G35833 NA non-coding upstream 662080 11153899 ~ 11159812 (+)
G35912 NA non-coding downstream 27224 11849532 ~ 11849748 (+)
G35913 NA non-coding downstream 28816 11851124 ~ 11851340 (+)
G35931 NA non-coding downstream 247887 12070195 ~ 12072400 (+)
G35971 NA non-coding downstream 637466 12459774 ~ 12461856 (+)
G35977 NA non-coding downstream 746870 12569178 ~ 12569580 (+)
G35903 NA other upstream 19688 11801458 ~ 11802204 (+)
dock1 dock1,LOC107740868 other upstream 820087 10747637 ~ 11001805 (+)
G35744 mrpl38 other upstream 1346109 10471380 ~ 10475783 (+)
LOC103024481 adamts14,LOC103367006 other upstream 2970500 8719354 ~ 8851392 (+)
LOC103037241 wac,waca,LOC107738973,LOC107665881,LOC107749376 other upstream 3348903 8442132 ~ 8472989 (+)
bnip3 bnip3,LOC107553688,LOC107653114,LOC107582186,LOC107706607 other downstream 289382 12111690 ~ 12566941 (+)
G35967 NA other downstream 544232 12366540 ~ 12370962 (+)
G35995 NA other downstream 879997 12702305 ~ 12703056 (+)
LOC103039668 LOC108435045 other downstream 1679938 13502246 ~ 13520702 (+)
G36371 NA other downstream 2640829 14463137 ~ 14463639 (+)

Expression


Co-expression Network