G35974


Basic Information

Item Value
gene id G35974
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 12573915 ~ 12575448 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU48427
ccacaaaaaatgcttatcgtgacaggcctaggttCATAGGTCAGAAATTGGATTCCAATTAGAAATTAGAACTTAATTGGatcctacattttttttaattttatggaataaaatatctaatgctctaatccagagTGACAagtttatttctattacagtaTTTGTCcgatgtagtgttaggagtttggagtcttgcccaaggactggtattggtgtagagcagcattcagtcacccagagtaggaattgaaccccagtctcccacatgatttagtagctcactggcatgcagtggtgttatccactgcaccacaccaaaaaaaaaaaaaaaaaaaatatacaaaacaacCCTAAAGAATAAAAGCTGGTCGTTTTTTTTGCGCTGTTCTCTGgtagtgtgaacgcagggtgtAAAAGATAAGATTTTAAGGTGGATCTGACTCCTTTAAGCAGCTggtttagatgaagatcagcaGGATGACTTCACATTTCATTACTGCCGCTCCAAACCCACATAATGCAGATTACATGCAGaatacagaacagaaaaaaaaaatcaaataaaatcaaataaccAAATAAATCCACATACATACCTGCTCGTCATGTAAAAAACGCTTTCTCTTTAtagttttgctatttttattaagtGGTTTTGACACCAGACGTTGGTGTGGTaatttatatatagatatatatttagatatatagaCACAGTCAGTGAGTAGATGTTATTATGCATGAGAAACAAAACGAAACgaaaaacaaaacgaaactaaaaataaagaaacaaaagatcTGCAATCTGTCCActgaccaaaaataaataaataatggagATCTGTAGTAAGTGCTTAAAAGGTAAAAACACCCGAGGCCTGGGACTGAGGCCAGGGGAGGAATGTTGACAGGCATTGaccagcaaaaaaatatatatatatataaaaataaataaagaaagaaagcaaaaaaaaaaaagcaaaaaaaaaaaaaaaagaaaaagaaagaaaaagaagtcaCTTTTTCTGAAAGGCCTGGGCTCTCAGGCCACAGATACTCTGGTATCTACGGTTCTACGGTTCTGTGGTTCTGACGGAGAACAAAAAGTCGACTGGGACGCTCTTTTTGGGATGACTGTTTTGGGTGATCTGTGATTTTGGtcgacaaacaaaaaaataaaaaaaaaaaaaaaaaataataaaaaacgaaAATAACTAAGGCTcagactgaaaaacaaaaaattaaacggaaagaaaaataaaaataaaaaaagaagacagaaagAAGATTTCAGTAACTGCTGAAAGGTTGAATCTGATTTGGCCTCGGAGTTACGAGGTTTTTCGTCGATTCTTTATGAATTTTTTATTGTAGATCTGGCGTatgattggtggaggagaaaaagagggGAGTAGATATGAGTGATGAGTGATGGGTGGGTCTTGCATTGTTGTTGATCTTGTGGTTGCCCTTTTAAACGAAAGATTTATGAAGGAGCAATGCAGTAGggtcaatgtatttatttatatattta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU48427 True 1534 lncRNA 0.35 1 12573915 12575448

Neighbor

gene id symbol gene type direction distance location
glrx3 glrx3,LOC107745700 coding upstream 479184 12073363 ~ 12094731 (+)
ptpre ptpre,LOC103359937,LOC107387775 coding upstream 1356543 11184890 ~ 11217372 (+)
foxi2 foxi2 coding upstream 1531022 11040698 ~ 11042893 (+)
trim65 trim65 coding upstream 2088117 10476390 ~ 10485798 (+)
LOC103039374 NA coding upstream 2131977 10437323 ~ 10441938 (+)
jakmip3 jakmip3 coding downstream 28509 12603957 ~ 12664928 (+)
dpysl4 dpysl4,LOC107653119,LOC107706606,LOC107582189,LOC107654562,LOC107568139 coding downstream 96097 12671545 ~ 12692068 (+)
LOC103039392 chmp6b,chmp6,LOC108429718,LOC107749864,LOC107684156,LOC107755461,LOC107690936 coding downstream 128890 12704338 ~ 12710368 (+)
LOC103024023 LOC108273716,LOC108429130,LOC107690938 coding downstream 142205 12717653 ~ 12831319 (+)
tekt3 tekt3,LOC107753251,LOC107684491 coding downstream 389334 12964782 ~ 12976020 (+)
G35973 NA non-coding upstream 1570 12570113 ~ 12572345 (+)
G35977 NA non-coding upstream 4335 12569178 ~ 12569580 (+)
G35971 NA non-coding upstream 112059 12459774 ~ 12461856 (+)
G35931 NA non-coding upstream 501515 12070195 ~ 12072400 (+)
G35913 NA non-coding upstream 722575 11851124 ~ 11851340 (+)
G35984 ppp2r2d,LOC105009682,LOC107553689 non-coding downstream 11450 12586898 ~ 12602796 (+)
G35990 NA non-coding downstream 94474 12669922 ~ 12670148 (+)
G35991 NA non-coding downstream 102799 12678247 ~ 12678497 (+)
G35972 NA non-coding downstream 119382 12694830 ~ 12695616 (+)
G35992 NA non-coding downstream 121501 12696949 ~ 12697208 (+)
bnip3 bnip3,LOC107553688,LOC107653114,LOC107582186,LOC107706607 other upstream 6974 12111690 ~ 12566941 (+)
G35967 NA other upstream 202953 12366540 ~ 12370962 (+)
G35903 NA other upstream 771711 11801458 ~ 11802204 (+)
dock1 dock1,LOC107740868 other upstream 1572110 10747637 ~ 11001805 (+)
G35744 mrpl38 other upstream 2098132 10471380 ~ 10475783 (+)
G35995 NA other downstream 126857 12702305 ~ 12703056 (+)
LOC103039668 LOC108435045 other downstream 926798 13502246 ~ 13520702 (+)
G36371 NA other downstream 1887689 14463137 ~ 14463639 (+)
LOC107197918 NA other downstream 1989477 14564925 ~ 14567912 (+)
G36439 LOC103041415 other downstream 2213932 14789380 ~ 14790833 (+)

Expression


Co-expression Network