G36011


Basic Information

Item Value
gene id G36011
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 12835279 ~ 12837320 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU48487
ttcagaaactgaagtgatctcttcatttttttttcagagctgtatatactgtagcaCTATTCCATCATTTACCACAGCTCTCCTCTTTATACAGTCGACAACACGAGCTTCTTCTTCAGGCACCTCGTTGTCCACAAGCCCATGTTTGCCCGAACGTGTCTCTCTTTGGCAGCAGAAAGATGAAGGTAATCTCTTACAGTTTATCCAGCAAAACCATCGTACTGATTTTTTATCGGTAGTTTAAAATCgttttgtaaaatacaaaaatagtacAGACTGCTGTATCTAGCTGAATCTAGGCTAACCTAATACGAAGAGAATGCCATGAGAGgcaaacaaacattaaacatatcGAGTGAAGCATAAAGACTTTTTGTTCCACCTCCAGGTTAATGCTCCGTCGCATAACTAATAATAAGTCCAGAGCACGTAAATGTGCGGATCACGTAAAATTCCTGTACAGAGTCTGTAGTCAAAGCGTCGAGCGGTTTCCTTCTGAGAGAGGAACGTTCCTCAACAAAGCTCATCAGAAAATGAAGTTCATATTGGACAGTAATGCcgtaataaaagaaaaaacaaaaacaagtaaacaatCAGTGCAGTATTCAGTAGTTTCTTTCGTtttctaataaataatattcaaaATCCAAATTTCCAATGAttaacaatcaatcaatcaataccACTGgtttcctttctttcctttcattCCTTTCTCTGAGAATTTCTTGAAAATGGTAAGAAAGGCgtaatgtattaaattaatgaTGCATTAAGACAACACTTATGAACAGTTCTGATCATCAGAAGGTAGTTGACATGTTCAGCATCGTTGGTATACATGATGATCACATGGAAAGCAAATATATGcctgatattttgatattttcaaGCAGCTATGAGATTGATATGAATTTCGCAAATTGAAATCAAggctcaaaataaaataaaaacatctcttaaacattttaaatgacacTGAACTGAATGCAGTACATggaaagtttgggcacccttaGCCaagattatcatttttttaatcagtatatttatttgCTGACAAATTGTAAACTTACTGTAACTACCGAACCAATTTTCTCTTGAAACACCACTGTTTAACTTCTTGTTAaccttattttacacacatttaatttaacagTTCAGAGGAACTGTGGAGGTCAACTCACAATATGCTGGTAAGACAGGCAAATCCCTTCTACGAAAACATAGCTTACACAAACATTCTCACAAACTCAATGTGTGTGAACATTACCTGTGTGTGATCTTGTCACAAAACACTTACAAAACGTTCTAACATAACTTCCAGATAAGGAAAATGAGATTTGTAAACTAAAAAGAGTGAGGTTTTTGGCCACAATCAGAATTCAGTAAGTCTATGGAATATGGAATTATAGAGGGGTTTGCCCAAACTTTTACATAGCGTATTTctcgcactataaggagcacttacatttcttaatttttcccaaaaaatcaacagtgcaccttatgtataaaccTTATAATAAAGCATTATAGGGGGGAAGTTTGTCTccaacactaaggctgggtgcagcagcatcagcattagccgctaaccgcccTGGGTTACTgcaacactcagggttcctcagtgaagcgatgtcaggtggcatttactagcgctaagtgctgctaaccgcagctagcacTGTTGCTAATCGGGGCTAGcggtgctgctaactgcactgttcaaaagagctagtgctgcggttagctaatgctgctgcaccaagccttagtggtggagaaacttcactgaaaactcgtTACTGTgacttataatgctgtacttcagcaaaatggctttactgctccttaatacctgactgaacATAGATGTTCATCgatagtgagccttataatccagtgcgccttatagtgcgaaaaatacagtgctGCTTTATGAAGTGGTTATAAATGGTTATGGGTTTAACTTTAAGCACTCTTTCTTTATACAACAGTACAATTTTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU48487 True 2013 lncRNA 0.37 2 12835279 12837320

Neighbor

gene id symbol gene type direction distance location
LOC103024023 LOC108273716,LOC108429130,LOC107690938 coding upstream 3960 12717653 ~ 12831319 (+)
LOC103039392 chmp6b,chmp6,LOC108429718,LOC107749864,LOC107684156,LOC107755461,LOC107690936 coding upstream 124911 12704338 ~ 12710368 (+)
dpysl4 dpysl4,LOC107653119,LOC107706606,LOC107582189,LOC107654562,LOC107568139 coding upstream 143211 12671545 ~ 12692068 (+)
jakmip3 jakmip3 coding upstream 170351 12603957 ~ 12664928 (+)
glrx3 glrx3,LOC107745700 coding upstream 740548 12073363 ~ 12094731 (+)
tekt3 tekt3,LOC107753251,LOC107684491 coding downstream 127462 12964782 ~ 12976020 (+)
pmp22 pmp22,LOC107684480 coding downstream 153823 12991143 ~ 13009673 (+)
psme2 psme2,LOC107653260,LOC107716467,LOC107556770,LOC107674582,LOC107551845,LOC107727955 coding downstream 460228 13297548 ~ 13305858 (+)
LOC103038526 NA coding downstream 515535 13352855 ~ 13359288 (+)
heatr1 heatr1 coding downstream 585717 13423037 ~ 13459971 (+)
G36004 NA non-coding upstream 41075 12772988 ~ 12794204 (+)
G35992 NA non-coding upstream 138071 12696949 ~ 12697208 (+)
G35972 NA non-coding upstream 139663 12694830 ~ 12695616 (+)
G35991 NA non-coding upstream 156782 12678247 ~ 12678497 (+)
G35990 NA non-coding upstream 165131 12669922 ~ 12670148 (+)
G36106 NA non-coding downstream 117091 12954411 ~ 12954711 (+)
G36129 NA non-coding downstream 379464 13216784 ~ 13278356 (+)
G36146 NA non-coding downstream 469773 13307093 ~ 13311608 (+)
G36154 avl9 non-coding downstream 485854 13323174 ~ 13325570 (+)
G36155 NA non-coding downstream 488615 13325935 ~ 13336434 (+)
G35995 NA other upstream 132223 12702305 ~ 12703056 (+)
bnip3 bnip3,LOC107553688,LOC107653114,LOC107582186,LOC107706607 other upstream 268338 12111690 ~ 12566941 (+)
G35967 NA other upstream 464317 12366540 ~ 12370962 (+)
G35903 NA other upstream 1033075 11801458 ~ 11802204 (+)
dock1 dock1,LOC107740868 other upstream 1833474 10747637 ~ 11001805 (+)
LOC103039668 LOC108435045 other downstream 664926 13502246 ~ 13520702 (+)
G36371 NA other downstream 1625817 14463137 ~ 14463639 (+)
LOC107197918 NA other downstream 1727605 14564925 ~ 14567912 (+)
G36439 LOC103041415 other downstream 1952060 14789380 ~ 14790833 (+)
LOC103028998 pyyb,LOC103028998,LOC108410797,LOC107745683,LOC107569181,LOC107684781,LOC107695522,LOC107753323,LOC107560546 other downstream 2595509 15432829 ~ 15440157 (+)

Expression


Co-expression Network