G36045


Basic Information

Item Value
gene id G36045
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 12573855 ~ 12574842 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU48533
tttttgctggtCAATGCCTGTCAACATTCCTCCCCTGGCCTCAGTCCCAGGCCTCGGGTGTTTTTACCTTTTAAGCACTTACTACAGATctccattatttatttatttttggtcagTGGACAGATTGCAgatcttttgtttctttatttttagtttcgttttgtttttcGTTTCGTTTTGTTTCTCATGCATAATAACATCTACTCACTGACTGTGtctatatatctaaatatatatctatatataaattACCACACCAACGTCTGGTGTCAAAACCacttaataaaaatagcaaaactaTAAAGAGAAAGCGTTTTTTACATGACGAGCAGGTATGTATGTGGATTTATTTggttatttgattttatttgattttttttttctgttctgtattCTGCATGTAATCTGCATTATGTGGGTTTGGAGCGGCAGTAATGAAATGTGAAGTCATCCtgctgatcttcatctaaaccAGCTGCTTAAAGGAGTCAGATCCACCTTAAAATCTTATCTTTTacaccctgcgttcacactacCAGAGAACAGCGCAAAAAAAACGACCAGCTTTTATTCTTTAGGgttgttttgtatattttttttttttttttttttggtgtggtgcagtggataacaccactgcatgccagtgagctactaaatcatgtgggagactggggttcaattcctactctgggtgactgaatgctgctctacaccaataccagtccttgggcaagactccaaactcctaacactacatcgGACAAAtactgtaatagaaataaactTGTCActctggattagagcattagatattttattccataaaattaaaaaaaatgtaggatCCAATTAAGTTCTAATTTCTAATTGGAATCCAATTTCTGACCTATGaacctaggcctgtcacgataagcattttttgtggatgatatatcgtcccagaaatgattgcgatacacaatatttttttgtaattttaagacta

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU48533 True 988 lncRNA 0.35 1 12573855 12574842

Neighbor

gene id symbol gene type direction distance location
tcerg1l tcerg1l coding downstream 156585 12243281 ~ 12417270 (-)
ebf3 ebf3,ebf3a,LOC107582179,LOC107745698 coding downstream 535273 11897053 ~ 12038582 (-)
fam196a fam196a coding downstream 1693021 10827410 ~ 10880834 (-)
wbp2 wbp2,LOC107667802,LOC107578800 coding downstream 2079669 10487067 ~ 10494186 (-)
mrpl38 mrpl38 coding downstream 2097978 10467821 ~ 10475877 (-)
ppp2r2d ppp2r2d,LOC107553689,LOC105009682 coding upstream 669 12575511 ~ 12603380 (-)
trnaq-cug_2 NA coding upstream 92994 12667836 ~ 12667907 (-)
trnaq-uug NA coding upstream 93874 12668716 ~ 12668787 (-)
LOC103039695 LOC108429709 coding upstream 123746 12698588 ~ 12702831 (-)
LOC103038875 NA coding upstream 262326 12837168 ~ 12914367 (-)
G36043 NA non-coding downstream 112001 12459772 ~ 12461854 (-)
G35946 NA non-coding downstream 506468 12050053 ~ 12067387 (-)
G35944 NA non-coding downstream 549279 12020754 ~ 12024576 (-)
G35941 NA non-coding downstream 578635 11975089 ~ 11995220 (-)
G35914 NA non-coding downstream 722489 11851126 ~ 11851366 (-)
G36047 NA non-coding upstream 87 12574929 ~ 12575451 (-)
G36061 NA non-coding upstream 30153 12604995 ~ 12605356 (-)
G36082 NA non-coding upstream 111184 12686026 ~ 12686397 (-)
G36080 NA non-coding upstream 119984 12694826 ~ 12695659 (-)
G36075 NA non-coding upstream 129510 12704352 ~ 12706177 (-)
LOC103036331 NA other downstream 501428 12067533 ~ 12072427 (-)
clrn3 NA other downstream 1490673 11053659 ~ 11083182 (-)
rpl38 NA other downstream 3142627 9426075 ~ 9431228 (-)
G35512 NA other downstream 3367944 9204570 ~ 9205911 (-)
tbata NA other downstream 3569959 8938933 ~ 9003896 (-)
G36074 NA other upstream 134966 12709808 ~ 12711545 (-)
lsm5 lsm5,LOC107653262,LOC107727957,LOC107674592 other upstream 732246 13307088 ~ 13311525 (-)
p4ha1 p4ha1,p4ha1a,LOC107753313,LOC108273903,LOC107560551,LOC107684765 other upstream 900324 13475166 ~ 13500177 (-)
c4h10orf88 LOC103041415 other upstream 2211110 14785952 ~ 14797212 (-)
G36677 NA other upstream 3172558 15747400 ~ 15774593 (-)

Expression


Co-expression Network