G36082


Basic Information

Item Value
gene id G36082
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 12686026 ~ 12686397 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU48574
CTACTCgtcaatgctacagcatcagcagcagttcaaaaagaggcggagtctgacttcatatttgtcagaggaggcgtgtgctagtcttcttcaccctcctggtgttggagcatcactagtgataggggatatagagctgagtagcagctgaataagTGGGATaattggccagataaattagaacagacagaaatagaaacagaaagaacagaTGGTAGAAGGTGACGAACCACAGCCTTATCCCAGACGATGCTCATGCGTTCCTCGATGCCATTGGTTCCCTCAGGGATGAGTGTAAAGTTGTCTtttcctacagctttctgagctGTGGAGAACGTGCAGTGAGCGCTGGCCGTCACCTGAAGATCTCCA

Function

GO:

id name namespace
GO:0005212 structural constituent of eye lens molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU48574 True 372 lncRNA 0.48 1 12686026 12686397

Neighbor

gene id symbol gene type direction distance location
trnaq-uug NA coding downstream 17239 12668716 ~ 12668787 (-)
trnaq-cug_2 NA coding downstream 18119 12667836 ~ 12667907 (-)
ppp2r2d ppp2r2d,LOC107553689,LOC105009682 coding downstream 82646 12575511 ~ 12603380 (-)
tcerg1l tcerg1l coding downstream 268756 12243281 ~ 12417270 (-)
ebf3 ebf3,ebf3a,LOC107582179,LOC107745698 coding downstream 647444 11897053 ~ 12038582 (-)
LOC103039695 LOC108429709 coding upstream 12191 12698588 ~ 12702831 (-)
LOC103038875 NA coding upstream 150771 12837168 ~ 12914367 (-)
LOC103038558 NA coding upstream 239836 12926233 ~ 12928968 (-)
trnam-cau_19 NA coding upstream 511305 13197702 ~ 13197775 (-)
trnam-cau_20 NA coding upstream 513769 13200166 ~ 13200238 (-)
G36061 NA non-coding downstream 80670 12604995 ~ 12605356 (-)
G36047 NA non-coding downstream 110575 12574929 ~ 12575451 (-)
G36045 NA non-coding downstream 111184 12573855 ~ 12574842 (-)
G36043 NA non-coding downstream 224172 12459772 ~ 12461854 (-)
G35946 NA non-coding downstream 618639 12050053 ~ 12067387 (-)
G36080 NA non-coding upstream 8429 12694826 ~ 12695659 (-)
G36075 NA non-coding upstream 17955 12704352 ~ 12706177 (-)
G36100 NA non-coding upstream 144945 12831342 ~ 12832622 (-)
G36093 NA non-coding upstream 148237 12834634 ~ 12849471 (-)
G36104 NA non-coding upstream 244428 12930825 ~ 12945228 (-)
LOC103036331 NA other downstream 613599 12067533 ~ 12072427 (-)
clrn3 NA other downstream 1602844 11053659 ~ 11083182 (-)
rpl38 NA other downstream 3254798 9426075 ~ 9431228 (-)
G35512 NA other downstream 3480115 9204570 ~ 9205911 (-)
tbata NA other downstream 3682130 8938933 ~ 9003896 (-)
G36074 NA other upstream 23411 12709808 ~ 12711545 (-)
lsm5 lsm5,LOC107653262,LOC107727957,LOC107674592 other upstream 620691 13307088 ~ 13311525 (-)
p4ha1 p4ha1,p4ha1a,LOC107753313,LOC108273903,LOC107560551,LOC107684765 other upstream 788769 13475166 ~ 13500177 (-)
c4h10orf88 LOC103041415 other upstream 2099555 14785952 ~ 14797212 (-)
G36677 NA other upstream 3061003 15747400 ~ 15774593 (-)

Expression


Co-expression Network