G52098


Basic Information

Item Value
gene id G52098
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 1401932 ~ 1407627 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU59360
CAGAAGAAATTCACAAACATTACGTGTTTAAAAAAAGTCTGTTTTAAAGTGGAATGTACAGTCTTGAACATTATTTATTTATTTATTTATTTGTGGGCAGGTTTTTCTACACGGATCAATATCAGAGCAGCGTGCGCTGAGAAGGAAACGCCATCCAAGCACCGCAGGACGCTGACCTTTCACTCTCCCTACAGGTCACACCATCCTCCCCTAAACAGGTCAACACACCAACACACAACTATGTCAAAGTATGCCTTAACAGGGAATATATCCAGCGGATACTAACACAAGCCAAGGAGTGGGCGATTCAATCAAAAGCCGAAAACGCAAGAAAACATATACCCAGCAGCCCATAGGCAGCTGCGCATTAATAATCAGTGTTCTGGTGATTTCTGAACAAACCGACTGTCTTCTTAGGAGTGGCTTCAAGTTGTATTTCCTGTGAATAAAATATGTAGGATATACATTATGTCTATGTGCCCATCTCAAAATACACTGTGGCACCGGGTGGTGATTTTACAGCCTATCCCTTCCCCCAGGCTTTACACAAATGAATATTAATCTGATCCTTCACTGTATAAAGTTCTACACACTGCACAGGAGATTTAACAAAGATAGTGACACGGGTGCGATCGCTCAAAGTCTCAAGAACCTCGAGTCTATTAATTACTTATGCTGAAGATTGTTTTCATAACACTTTTCCTGCTGTCACTGATCTCATCATACACGAAAAATAGCCTGCGACAATATTCCTTGACGTTGCTACATAATGTCAAATGCGCCGTTTACAATTCTTTTGTTTTATATTATACCGCTTTTATTGGGTTTATTCATTATCTGCGCTTGGAAAGCACACGGAATTAAATAAAAAAAACCGGCTTACAATTGAGCGAACAAGTCTCAGTCACCTCTTAATTCTGCAGGATTTTTTTTTTTTTTTTTTTTTTTTTTTTAATATAGAGCTTGTCAAGAGTGCCAGAGTCAAGTTCAAGTTCACGGCCACTTGATTTCAAACTCCATTTTATCCTAAGTGTGGAGGGAATGGCGACTGCGGCATTAAATTGCGGCATTAATCCAAGATTAAACAAGGCTACTCTAATAGTGAAGAAAAACTTTATATTATTTGTACTGATATTATGGCCACAAAAGTCAGTTTTCCCGTGTATCTGTTTTCTTCGCACTGCACTCAGTAGCTATGCCTGTGCGTTGTTGCGAAAGCTCTGTTAAAATGTTTGTGTCTTTTTTCTTTTAAAATGCTGAAATATCTCTATCAGTTCTAGTGGTCCATTGGTGTTTGAAACGCCGAGATGTTTATGGAAAGATAATTCTGCCTAGTAACACAACAGCTAAATGCGTCTTCAGACCACTGTCAAATTTCTGGTTTAAAGTCTGTTTAGACTACACAAAAAAGAAGGCCTAAAAGTTGTCAAAGTTTACTAATATAATCTATAGAAAGCATGGAAGGAACACGACGCGTTGTAAAGATTGTACACTTGCACCACGTTTTATTATATCTGTATGCAGTAAAATTTTTATCACAATAATGGAGAAAACACTTCTCAAACTTTGAACAAAACACATATAACAAAACAACTGCCCCTGTTCAGCCCATAATTGTACATATTTATAGTAAAGAAACATTCTTTATAAATATTGTTTCATCTGTAGCAAGTAAATACCATAATTTAATTACAAATGGATAAATATGGCAGTCGATATTTACAAAAAGAAGGGTGTAGTTACAGATATTTAACGGCACGACATTAATTTGCCCCACAATCTTCCAAATATATTTCACAATTCAAACTTGCAAAGCACAAAACATCACAAGTTAATATTGTGTCTGTCTTCGTTAAATGTTGACTTTGGCACTCTTTCCAGTTAATAGTTGTTTAGTTTACAATCAGTTTGCCTTAATGGGATCACAATATTCATTATGATAATACAACTTTATGGTAATATGTGCACTAAAAAGTCCAGTTAGAGAAATAGCTACCATTGAAGGAACATCTATACACCAAAAAACCGACAAAATCTATTACAACCATTGGGAAAGAGAGCGCGTAGTATGTACAAAAAAGATTATGCTTAGTGCTTTTGCGCACGTTTCTTCTGTCGATGTGGGAATGTTAAATCCTGCTGGACAAGCGCGTAATATAGGAGCGTTCGTTTTGTACAAGCTGTATATGGATCTCCTGGTTTTCTGAAATGGTTCCTCCTGGGATGGCACAGTCTTAAACATACCATTCACTGAAATTGGACGATAAACTGCTGTGGTTGTTGGAACTGTGGACCGCTGAGGAAGGCGACAGATTGTTGTTGCTTTGGGTCTCAGTGGAGGGGGACACCAGACCAGGGGGTGTTGAGGACTCATAACCAGAACTTGCCGCTGGCGACGAGTCAGATGCAGATGGGGATGACTCGTGAACCTAAACACACACACACACACGCGCGCACAAAAATTAAATAATTAATGATCCTCGGAATGAATCATGAATAGCGTGTATTGGTAAAACTTATTCATGAGTAAATTCTGGACAAATCAATAGTTTGTTCAAATATGAATCAATGCATTAGCTAATAATCTGTTATGTATATAGCCTAATACAATCATGTTTGTTAGTGTTTTTAATTAAATGTAGGCTATCATTGATATTAACACACGAAGTTGCCTTTAAACAGTTTAGTGGCAAATATATGTATAATGTATTTCTCATTCTGTGTTCTAGAGGAATTACCTTCATATGCTTTCGAAGAGAGCTGGGGTGAGTGTAGGACTTGTCGCACATTTTGCACAGATACGGTTTGTCTGACGTGTGAACGTGCATGTGCTTCTTTCGGTCACTGCTGTTCGCGAAGCGCCGATCACATCCCTCAAACTCACACTGAAATGGTTTCTCCCCTGAGAAGAAAAAAAGACGATATAAACATTCACACGATTAGTGATTAAGGTTTAAATCAGTTTTATTTTTTAAAACACACCACAAAAATAGCCATATCACAACATATAATAAATCTGCGATTCAGGTATAGCTTCAAGAGAATATATAAATGTAATTATTTCTAAAGATAAAACATCTAAAACAAAGCATTTTAAATAAATTTAAATGAAATCACTCAAGAGGTTATCATATGCACGTAGTTGTAATACAGAGCTGTAGTACGCCTTACAACGACACAGGGGGTCACACACAGCCTCATCTATAGCCTTTCCAAATATGAGCAGTGTAAAAGTTACAACAATAAATAGATATATAAAATCTAATTCTGCTGATAATTACGTTTGCAAGAATTTGCTTTATTCAGCGATCTGTCCAAACAAAACAAAACTGAAATAATCAGTCACACTATTTTCAACGTTCAGCTTTTGTCAGCCCCGCACAAAACTTAGCCATTTGCTTAGAAATAATCAAAATGCAATTAACACCTTGACAAATAGAAGGCTCAATACCTCCGTGTATTCTAAAGAGGAAATTGCTCAAATGTGCAACCCTGGTAATGGCCTGTCTAACACATAGTCTGTCAATGCAATGGAAAGAATAACAAAAGGCCCACATATCGCCCATTCCTAAAGTAGGAAATATAGCCTATTCTTATTTTTATGTCGTCCTTTTTGTGTTGGAAATGGTCTGCATTCATTTTGTAATTCTTATGTACATGCATGTGTAGCTATGCGCTTTGTATACACTTTGTAATCATTGTTTTTAAATATAAAGTGTATTATTGTTATATATGCATTGTTTCTAATTTTAACAACAATTAAAATACTCCGGTACGTGGCCAAAAACCCTACAAAATAAACTGGAGTAAATTTCAAAATCCTGACGTAGTAACCCGAGTGCTTGAGCATTGGTCCACGCAAACATTAAACCGGTTGGAGAGATTTACGGCTGCTCTGCGCACGCGACGAGCCCTCGAGTCGCCTTTGACCCGTTTAAAGTTTATGAACCACAAACCCTCGACAGTCTCTTACATAATTCAGCACATTGTTGCAAAACATCGCATTTAGCCTACTCCGTACGAGTTCAGGTATAATCGCTTTCAGCCGCGTTCACTTAAACGAATTGGATATGTGCTCACAAGCATCCGTTTTCTTTTAAAGATCTAAATCTGCTTGCGCTCTCAAAGTCTAAAAATACACCGTCCTGGCATAATCAGCTTATTTTTGTAAGAACCACTATTTGCGATACTATTTTGAGGGTTGATAAAATAGAGCTCCAAAACATATGCAACACCCACAGATGTTAATGTGACAAGCTCAAGCAGAAATAAATATCATAATTACCTGTGTGTGTTCTCTTGTGAATCTTCAGGTTTTCTGATCTTGCGAAGACTTTTCCACATCCAGGGAACGGGCAGGGGAAAGGTTTTTCTCCCGTATGCACGCGGATGTGATTGACCAGTTTATATTTGGCTTTAAAGGGCTTGCTTTCCCGGGGACACTCTTCCCAAAAGCAGACGTGGTTGCTCTGTTCGGGTCCTCCAACGTGCTCGACCGAGACGTGGGTGACCAGTTCGTGCATGGTGCTGAAAGTTTTATTGCAACTCTTCTTAGGATTACTGAGCTGCTCTGGATCGATCCATTTACAGATGAGCTCTTGCTTAATGCACTGCTGCCTCATGTAGCGAAAGAAGGCACCGGGGTGATGGTGATGCGCTGCCATATTCATCCCCATGTTCATATTCATGGAGCCGTACTGGTTGTGCAGCTGGGCGGCAGAGTAAGGGTCGGTCCTCGGGCTGGAGACCTGGTGGTACTGGTCTGATCGCCCGAAAACCTCCCCCGGTAGTCCGAGTCGCATCTGCCCGTTGAGCACGTTTGGGGAACCGTGAGATCCATGCTGCTCGTGGATGCCAGGGAACAGAATGTGGCCTTGGCTGTCTGTGTGAGAGTGATGGAGCGAGCCGGCAGTGGGGCCGAAGAGTGCGTGCTGGCCTCCCGCCGGTGACGATTCCCCGAATCCACGGCTGCGAAAGAGAAAGTCCCGCGTGGAGTTAAACGGCGAGCTCGCGTATGATGTGACATGAGCCGCGTGCGCGCCCAGAGCCGCTGCGGGGTAACCGGGCGCTTGGCTCGTGAATGCAGAACTCTGTCCGGGCGAGAGATCGTGGTTCAGTTTGAAGGCGCCCATGTGCGCCGAGTCGACGAAGCTGTTCTGCGCTAAACTCAAGTCTCTGTCCTGCATCTCACTGGAGGAGTGATGATGCCTGGCAAAGGTGCCCACTCCCAAACCAGGGAACTGATGCCCAGCGTCCAGTAACATGCTTTCGTTGAGCAAAACCAATTCTCTTTCAAGCAGTCTATGCACGGCGCTTCAACAAAACATATAAAAAAAATAAAATCGAATGCGCTACGGGAATATTAACTTCCAGATTTGATAACACGACATGAGGCGATGAAGTTCGATCCGCTCACAGGAAAAAAAGCTTTGCGTATTAAGTTAGGCTATATTTTTCTTGTGGATAACTTGTTACTCAAAATCCCCAATGCAACGAAATGAGAAGATTCCTTTGCGCTTTTCCTTTCAAACTGAGTCGATGTCGTTATTTTCAGAATACACGAAAATACGAGTCATTATCTTACTAAGTCTTCCTTGTTCTTGAAGCATCTCGAATTGGAATGTTTATTTCTTTCGCTTGTCTATGTTTATCTCGGAGGGTC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU59360 True 5662 TUCP 0.44 2 1401932 1407627

Neighbor

gene id symbol gene type direction distance location
CI01000009_01394603_01397604 ZIC5 coding downstream 3459 1394558 ~ 1398473 (-)
CI01000009_01386589_01389680 NA coding downstream 11783 1383864 ~ 1390149 (-)
CI01000009_01327537_01337349 NA coding downstream 64086 1327312 ~ 1337846 (-)
CI01000009_01293719_01294750 NA coding downstream 106969 1292716 ~ 1294963 (-)
CI01000009_01264011_01272894 GPR183A coding downstream 128592 1263607 ~ 1273340 (-)
CI01000009_01423940_01424233 NA coding upstream 16084 1423711 ~ 1424573 (-)
CI01000009_01541031_01546978 NA coding upstream 133267 1540894 ~ 1547804 (-)
CI01000009_01550846_01564109 TMTC4 coding upstream 143157 1550784 ~ 1565168 (-)
CI01000009_01596212_01681960 NALCN coding upstream 188074 1595701 ~ 1682027 (-)
CI01000009_01743393_01795392 FGF14 coding upstream 335491 1743118 ~ 1795461 (-)
G52102 NA non-coding downstream 86452 1305269 ~ 1315480 (-)
G52096 NA non-coding downstream 118025 1283543 ~ 1283907 (-)
G51951 NA non-coding downstream 131907 1267951 ~ 1270025 (-)
G52094 NA non-coding downstream 135320 1266178 ~ 1266612 (-)
G52160 NA non-coding upstream 18447 1426074 ~ 1431565 (-)
G52157 NA non-coding upstream 38867 1446494 ~ 1450926 (-)
G52244 NA non-coding upstream 281445 1689072 ~ 1703392 (-)
G52267 NA non-coding upstream 485352 1892979 ~ 1893288 (-)
G52274 NA non-coding upstream 566575 1974202 ~ 1975828 (-)
G52410 NA other upstream 1144097 2551724 ~ 2562533 (-)
CI01000009_02885473_02893975 NA other upstream 1476061 2883688 ~ 2893975 (-)
CI01000009_03261739_03262843 NA other upstream 1853576 3261038 ~ 3262843 (-)
G52828 NA other upstream 2809793 4217420 ~ 4231469 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00014664 zic2,LOC106586042 coding CM030128.1 CM030128.1 26168461 ~ 26172474 (+)