G36146


Basic Information

Item Value
gene id G36146
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 13307093 ~ 13311608 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU48658
ATCCTTTCTTGCATTTttaattacaacaaaaaatCTCAGTTATTGAGCAGTCATGTTTCAGAACTTTAAACAGGGTTTTATGTTTtctgataaagaaaaaaacaaaacaagacagtACAACTCAAAGGACAGCTTTTACAAACAGGAGAAACAACTAAAGGCCGTTATAAAGAGATGAAAGAAAAATCCAGGATGTCTTCTCATACTTCCGGTCCTTCTCCTCCTGgaattaaCATGGTTATGTTGTTTCCATTTAGTAGAATCTGATCCAGCTTGGTTATTCTTCTGCCTTCTGGTGTAATCTCAAATTCTGTTACATCCTCAAGTACCATGTTGACAAAGTCATCAAAACCCAGTAAGGTACCCCACAATCTCTTTGTCATTTTTCATAACAATATGAATTCGGGAGCCGATACATTTGTCCACCAGctCGAGAGGAAGGAGCTGGGACGGGTTTGAAGCCGCTGTTGCCGCCATTTTGCAAACAATCTGAACCCGAACTAAACCAGAACTACTGTTAGAGAATCTGAGGAGGGACCCCTGCTGGCGGGGTTAAAACATCTCAGAAACACAGCCTGCGTCTGGATACGGGGGTTAAAATCTTCTTAAAGCTTGATTTTTGAGCTTGAAGCAAccatacaaaaaacatacaaactcATAGATAGTTACAGAACTCACAAACACAATATAACGTTAGCTAACACGACAGAAACCCATGTAACTTAACTACTTTACTGTTCTAATATCTACAGTACCAGcataaagtttg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU48658 True 769 lncRNA 0.39 5 13307093 13311608

Neighbor

gene id symbol gene type direction distance location
psme2 psme2,LOC107653260,LOC107716467,LOC107556770,LOC107674582,LOC107551845,LOC107727955 coding upstream 1235 13297548 ~ 13305858 (+)
pmp22 pmp22,LOC107684480 coding upstream 297420 12991143 ~ 13009673 (+)
tekt3 tekt3,LOC107753251,LOC107684491 coding upstream 331073 12964782 ~ 12976020 (+)
LOC103024023 LOC108273716,LOC108429130,LOC107690938 coding upstream 475774 12717653 ~ 12831319 (+)
LOC103039392 chmp6b,chmp6,LOC108429718,LOC107749864,LOC107684156,LOC107755461,LOC107690936 coding upstream 596725 12704338 ~ 12710368 (+)
LOC103038526 NA coding downstream 41247 13352855 ~ 13359288 (+)
heatr1 heatr1 coding downstream 111429 13423037 ~ 13459971 (+)
arg1 arg1 coding downstream 149043 13460651 ~ 13471964 (+)
nudt13 nudt13 coding downstream 189439 13501047 ~ 13508892 (+)
ccser2 NA coding downstream 214155 13525763 ~ 13630014 (+)
G36129 NA non-coding upstream 28737 13216784 ~ 13278356 (+)
G36106 NA non-coding upstream 352382 12954411 ~ 12954711 (+)
G36011 NA non-coding upstream 469773 12835279 ~ 12837320 (+)
G36004 NA non-coding upstream 512889 12772988 ~ 12794204 (+)
G35992 NA non-coding upstream 609885 12696949 ~ 12697208 (+)
G36154 avl9 non-coding downstream 11566 13323174 ~ 13325570 (+)
G36155 NA non-coding downstream 14327 13325935 ~ 13336434 (+)
G36166 NA non-coding downstream 81037 13392645 ~ 13394580 (+)
G36177 NA non-coding downstream 162546 13474154 ~ 13474794 (+)
G36175 NA non-coding downstream 163533 13475141 ~ 13477939 (+)
G35995 NA other upstream 604037 12702305 ~ 12703056 (+)
bnip3 bnip3,LOC107553688,LOC107653114,LOC107582186,LOC107706607 other upstream 740152 12111690 ~ 12566941 (+)
G35967 NA other upstream 936131 12366540 ~ 12370962 (+)
G35903 NA other upstream 1504889 11801458 ~ 11802204 (+)
dock1 dock1,LOC107740868 other upstream 2305288 10747637 ~ 11001805 (+)
LOC103039668 LOC108435045 other downstream 190638 13502246 ~ 13520702 (+)
G36371 NA other downstream 1151529 14463137 ~ 14463639 (+)
LOC107197918 NA other downstream 1253317 14564925 ~ 14567912 (+)
G36439 LOC103041415 other downstream 1477772 14789380 ~ 14790833 (+)
LOC103028998 pyyb,LOC103028998,LOC108410797,LOC107745683,LOC107569181,LOC107684781,LOC107695522,LOC107753323,LOC107560546 other downstream 2121221 15432829 ~ 15440157 (+)

Expression


Co-expression Network