G36175


Basic Information

Item Value
gene id G36175
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 13475141 ~ 13477939 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU48692
gataataataataataatggtggaCCTTTTGAGCATTACTTTTAGGAGACTTGGCATTCATTCAAACATTTGTCTCTTTGCTGTTAAACTCTTGCACATTGTTTTAATGGAGTTTTAATGGTGAAATCAGATGAACAAGCTGAAGACTAAAAGCGGTCAGATTGCGTAGCTGAAAAGCAGATGaagcttttatttgttttgtgccACATTGAGGGGAAAAAAGGCTCCAGTGTGTACCCATGGCTATAAATGTCAAccatctgtctgtttgtccCTGTGTGAATGACCTCAGAACGTAAATCGGCTCTTGAGCGCCAACCTGGCatcagagagagtgagggagtgtcCGACTGGTGGAGGGAGAGGGGTTAGTGTGACActgcaagagtgagagagagtgtgtgtgtgtgtgtggctaagCTTCAAATGCACAGTCAGCTTTTGGGATAATGACAGTATGTACTGTAGCTCTAGCCACACAGATATGCACAGTCATATCAGAATGACATAACCCCCTTCTTGTTTATAAGCTCACTCTTCGGTTTATCAGCTGCACTGATCATTAAGGGgcttttgtagttctataattacagactgtagtccttctgtttttctgcatacgTAATTATCCTCCTTTATCCCTGTTCTTTAAAGGTTAGGCCCCAATAAAACCACCAGAGTGTAGCTGTTATTTGGATGCCAGGTCATTCTCAGCAGGACTGGACTATACTGCTGGACTTTTtgaacacctcagtgtcactgctggactgagaatcaTCCTTCAACCAGATGTATCCAGTCAAAAGCATCCTATAGGCCGTCATAAAATACCTATGATGACAGACACACAATGTGCAACAACAAAGAAGCTTCTGTCTCTACTTTACATCTACATGGTGGAGCAGCTAGGTATTTAAAGTGTTACAGGTAATAAAGTGAACAGTGAGTGGacatagtgtttaaaaactccagcagcactgatgTGCCAGTATCATTGCACtcctgagaatgacccaccacccataTAGAGAGGTTAATAATGTATGAAGAGAAACAAAAGGACCATAGTCTGGATAATCATAACTAGCTGACGGCTTGATTTTTAGCTTAAAGGGCAATTTTACCATCTTTCCAAATCACtctaaatcaaattttattatataagcattattataccacagttagttccgaccctgcaatgtgattgggtgagaggcgttctataggtgccattatcagccagtaatgcactgttaccgaagctctccatgttttACTACGCCACATATAGGTGACCTAGTAACGATGCAACGCTTACCAGcaaaacagcgcagctacaaacagagcagcaatggaactattttaactcgcagagcgtttataaccaaacagatcatattttcttatcctctttaaatcattttttctcaataaacagtgataaaggagctgtggtataatcacTATACTACACTAGCGATTAGCACGAGATTCATgctatattgtgtaatatttgCACTGCTGTGCTAATCTATGGCACAAGGCCGCAACCACAGCACAGCTGTgtcaatattatacattatagcaCAAATCTCGAGCGTATTATTTCTTAGTCACATGACTAGGAGAAATTATTACTAAGTAATTCAGAGTGGGTTTGGTGGAAGACTGGGCCTCTAAAATCTGTTCATGGTGGAGGGATATGTGGAAGGTGCTGTATGGCAAAAAAACAGTCCCCAAAGATAACAGGCTACAATGACAAACGAAAGTTTGTCAAATGGAtcataaataaagtgttatctATAGAGACAGTTTGGGAGTGTccatatatgtgtatgtgtacgtTATGAggagttatcttgtgagtaaggttaaAGACTGGCCAATGTGCTCATGCCAAAGCAACATGAATTATTGGAATTTAAGTGAGGCCAGaaagtgggtgccagatggatggtcATAAAAGGAATTACcccccacagtggacagcacagtgattGATTGTAATGGTTGTGACCAGTGGCTCAGGCCgaaattgtccatgcaaacaagCAACACTGACAAGCAAATCTGGAAGAAGTGACATTCATATTAGGTGTAGGAAGCCTGGCATGCTGTCCAtgaaacatggcaaaagtcatgggacatgataccaGTTCCTATTCTGTGACATATGGCATGCCAGTATATGATGAAAAAGTCAATAAATTCCTGTTACAATCTTTCTAATATATGATTTTAccacaactgtgtaaaataatttaaccaATACAATTCTATAAGGGCATTACTAAATCTAGTTCTTAGTTCTTATAAGCTGTTTTAGCATTCTGGCTTTAGTATCTGCAGGCTTCTCAGTTCTTTGTGAGCTCTGTCTCTTTGTTCTTGGCTTCAGATTTGTCTGATTTTTAAGGTGCAAGACCAGCCCCCTGCAAATCTGCACCAATATTAAAGGAATATTCCAGTTTTCAAGTGTGAGTCAACCTAAACTCTATCTGCTGCATCTATATTATACTGGTGTAATACAACTAACAAAACTGAGAGCTTGGCTGTATTCACACAGCAAGTAAAACtgggtcagtgtaacgtttataGGTTCGTTTTTCTGACCGTTTAAGGCTAAATTTGAACATAGAAATTTGGGTATGAAATTGTGttatttaattttccattttttttgtaaagaaaaagaatcttaatgtttttttttttccatttttgtatcttgtaacaaAAATCTGATTGTAAAATGCAACTTACTTTTGTAACAAGacggaaaaatcagaaaattgaCAGAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU48692 True 2799 lncRNA 0.39 1 13475141 13477939

Neighbor

gene id symbol gene type direction distance location
arg1 arg1 coding upstream 3177 13460651 ~ 13471964 (+)
heatr1 heatr1 coding upstream 15170 13423037 ~ 13459971 (+)
LOC103038526 NA coding upstream 115853 13352855 ~ 13359288 (+)
psme2 psme2,LOC107653260,LOC107716467,LOC107556770,LOC107674582,LOC107551845,LOC107727955 coding upstream 169283 13297548 ~ 13305858 (+)
pmp22 pmp22,LOC107684480 coding upstream 465468 12991143 ~ 13009673 (+)
nudt13 nudt13 coding downstream 23108 13501047 ~ 13508892 (+)
ccser2 NA coding downstream 47824 13525763 ~ 13630014 (+)
btbd16 NA coding downstream 1145290 14623229 ~ 14645576 (+)
LOC103046321 plekha1 coding downstream 1173711 14651650 ~ 14702499 (+)
LOC103041103 htra1,LOC107660481,LOC107745581 coding downstream 1242940 14720879 ~ 14775197 (+)
G36177 NA non-coding upstream 347 13474154 ~ 13474794 (+)
G36166 NA non-coding upstream 80561 13392645 ~ 13394580 (+)
G36155 NA non-coding upstream 138707 13325935 ~ 13336434 (+)
G36154 avl9 non-coding upstream 149571 13323174 ~ 13325570 (+)
G36146 NA non-coding upstream 163533 13307093 ~ 13311608 (+)
G36244 NA non-coding downstream 83189 13561128 ~ 13564733 (+)
G36273 NA non-coding downstream 184491 13662430 ~ 13662847 (+)
G36276 NA non-coding downstream 198874 13676813 ~ 13677131 (+)
G36298 NA non-coding downstream 331803 13809742 ~ 13810238 (+)
LOC111192373 grid1,LOC105909129 non-coding downstream 385356 13863295 ~ 13974734 (+)
G35995 NA other upstream 772085 12702305 ~ 12703056 (+)
bnip3 bnip3,LOC107553688,LOC107653114,LOC107582186,LOC107706607 other upstream 908200 12111690 ~ 12566941 (+)
G35967 NA other upstream 1104179 12366540 ~ 12370962 (+)
G35903 NA other upstream 1672937 11801458 ~ 11802204 (+)
dock1 dock1,LOC107740868 other upstream 2473336 10747637 ~ 11001805 (+)
LOC103039668 LOC108435045 other downstream 24307 13502246 ~ 13520702 (+)
G36371 NA other downstream 985198 14463137 ~ 14463639 (+)
LOC107197918 NA other downstream 1086986 14564925 ~ 14567912 (+)
G36439 LOC103041415 other downstream 1311441 14789380 ~ 14790833 (+)
LOC103028998 pyyb,LOC103028998,LOC108410797,LOC107745683,LOC107569181,LOC107684781,LOC107695522,LOC107753323,LOC107560546 other downstream 1954890 15432829 ~ 15440157 (+)

Expression


Co-expression Network