LOC103039668 (LOC108435045)


Basic Information

Item Value
gene id LOC103039668
gene name LOC108435045
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 13502246 ~ 13520702 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU48695
ttgcaaaaaaaaaagttcttGCAGCAGTGCCATAAAAGAACCATTTTtgattccttaaaaaaaaacataataatataaaaacaagctAAAGCTCCTAAAGGTTTAAAGAAACTTCACTGAGTGTGGCTTACCAGGCATCAGTATTGGATAAACAGATTATATTATTGTATCTCTGCCTGTTTGGTTTACAAGAGTTTGCCCCACCCATTTCACACTGATGTTATAAAGTGTGAAAGCCTATGTTGCAGGTTTAGTTAGCCAGTCAAAACATTTGTtgtgaaaaaacaaaattataactgtttttgtttcatAACCCCAAACGTCAAAAGCACAATTCCAATGCTATCCCACAAAATGAATTTAAGGGTTCTATATAcattatgtatacatttttttttaacattcatacGTCATTATCTAAAGAATCAATCATCAACcgtcaaaaagtttttttttttttaagttatcaGAAGTGGTTCTTTTTCTGTGAGAGTGTTGCTGCCTCGGACTCAAGTTTTCCATGATGGTGATAATGCTGTAGCATTCTGCACTAGCGCGGATACTCCTCAATCCAGAAACACAGAAATTTGTGAATTTCTGACAGACATTAACAGAACTTAGAATTAACAGATGTGCACAATCTacataaatgctattttttaagaTGTTTCTGATTTTACTCTTTGCCTGAACCACCCAAAGAACTATTTTTGCTGTAGGAAAATAAGGCTGAAGATGAACACAGTACCTGCTATGAACCTCCAAACACTGGGCCACTGGAAAATGCAGCACAATAGACTGGTGCCTGCCTGTGGTGATGGATTTTTTTGAGGCCAAAGCAAAGCTTTTGTAACAAAATACAAAGCTGTTAAACTCTGCTCACATGTTCTCTCTTCgctaaaacaatgtaaaagaTTGAGGAATACCTCCCTCCTCAGGCTGATTATAGCTGTTTGAGGTTCACACTAGTTGTGCTTCCCAGTGGCTCTCGCTGTTTCttgattttgaaataaaaatgttatgctgttggtttggtttttaatgacTGTC
>XM_007260023.3
ATGCTAAAGCAGTGCGGACTGATCGGCGGGACTGATGTCTGTGCCGGCGCTGCACGCGCACCTGGCGGCGGTGCTGGAGGCGCTGATCCGCGCGGCGGTGGCGGAGATGAGCGCGCTGCTGTTGCTGCGGGACGAGCACAAGAGCACGAGCGCCACCACAACAACAAgaacacaaacaacaacaacaacaacacaacaacaacaacagaaaaagacacagaaccGACACAGAGAGCAGCGCTGTTACTGCAGGGGGAGAACGAGCAGAGACTGAAGAAGTTCGCGTCAGTCATGGAAGTCCTGGGCAATGAGGCTCTAGGTAAGATCATCAAGCTTGTGGATGAGACCAAGTTTCTGCTGGAACTAGAGTGCAAGACTTTTTCAGGAAAGAGAGCACAGCACCCGGGGAGCATCCTGAACATCCTCTCAGTGGGAGAGCTGGAGGAGGAACATTCCTATGATGGATGTGGAAGAAGCTCGGAGACGAGAACGCAAGATGAGTCTGCAGACACAGATGAGCCTCAGCAACCAGACTCTCCATTAACCCTGGCAGTGACCATCAAAGATGAATTTGGAAACATTGACCTGAAGTCCATCATAGCAGGTCATTTGGAGCTGACTTCCACAGAAGGTCGAACAACAGAAGAGGGCAACGAAGCTGATCAAGACATTGGGAGCTTTGGAGGACGTAGAGCTTACATATGTTCAGAGTGTGGGCGAAGTTTCTCCACAGTGAGCAACCTCAAATCCCACCAGCGCATCCACACAGGTGAAAAACCCTTCGGCTGCGTGCTCTGCGGCAAGGCCTTCGCCCACAAGCAGAGCCTGGTGGACCACCACCGCGTGCACTCTGGGGATAAGCCCTTCATCTGCAAAGTGTGCGGCAAGTGCTTCGGCAAGGCAGCGCACCTGAAGACGCATGAGATCATCCACACGGACGAGAAGCCGTTCAGCTGCGACAAGTGCGGCAAAAAGTTCAACATTGCTCAGAACCTGGCGAGGCACCAGCTGACGCACACGGGCCAAAAGAGCTTCGTCTGCTCCAGTTGCGGGAAGAGCTTCACGCGGGCCAAGACGCTCATCACGCACAAGCTGATCCACACGGGCCAGAAGCCCCACACCTGCATAGTGTGCGGCAAGTCATTCCGGCACGCTGTAAACCTGCGCAACCACGAGCGGATCCACACCGACTTACGACCGTACCCCTGCGACCTCTGCGGCAAGACCTTCCGGCAGGCGGTCAACCTCAAGATCCACAAGCGCAttcacaccggtgagaagcccTTCACCTGCAAGGAGTGCGGTAAGAGCTTCAGCCAGCAGAGCAGCCTCATCTCGCACGGCCGCACGCACTCAGACCTAAAGCCCTTTGGCTGTCGGTACTGTGAAAAGTGGTTCAACAACTCCAACAGCCTGAAGCTCCACGAGAGGATCCACACGGGCGAGAAGCCGTATAACTGCGAGTCCTGCGGCAAGTCCTTCAGCCAGGGGAGCCATCTGCGGACGCACAAGCGGCATGTGCACGGAGGGGGCAAACAGTATATATGCGACAAGTGTGGAAAGCGCTATGCAGACCCGCGCAACCTGAAGCTACACAAGTGTGTGTATGCTTGAGTACGACTCGGACTCAGGACTCAGGACTTTTTAAAGGGGAATTCCACAATATTGTTAAAATCTGCTGcattattcagtgtttaaaaggtggtttgatttattattaagaaatgtgccaactctgtttttttttttattcatatgaaATGGGTGTTGATTGACACAAATatgaccttttttatttaatatccaATCCCACCAGTCAACCAATTAGTCTTTTCAGTTCTATAAGGAATGTTGATAATGGTAGAATTGTTGCAAATCAGCTGCAATTGCAAAAAATAGGCTATAAAATAAGCTTTGCCTCCCATTTTTATGAATGTATCTCTCTACCATGAATTACAAGTTATACATGAGTTGCGAATACAGTAATATGCCTATTTAAAATTCTTATTTTCAGAAATATGGTTGCACAATGCACATTATTTGCAGATTAATCTTGCTCTTTTGTCTTTAAACTCCCACCGTTTTTGAGATATTGATACTGTTCCAAGCCCAGATTGAAACACACATTAAACCAACCAGTAACCACCTAGTATGCAATAGAAAACCTCCTATCAGGATCTTAGCAACCAATACCTTTTTTAGCCACCATCTAGCAACAGTTTAGCATCCAACAGCTTCACCATAGCAGCATTTagaaactgcttagcaaccaaccCGTTACAATAGATTAACATCTCAGCAACCAACAGCTTCACCATAGCAACATCTCAGTAACCAGTAGAGTTTTCTCAGAATTCTAGTAAAACAGTGTTTCAGGTAGTATATTTATATCAAAGTTTAATGTTATGAGTTTCTGCCATGATGTTTTTTACACCAATTCAACTTTCCTCACATCTTAATCACTTAATTATAtgaattttacaattttaaaacaatagtgGAATTCCTCTTTCCGGAAAAAAaaccttgcaaaaaaaaaaagagttcttGCAGCAGTGCCATAAAAGAACCATTTTtgattccttaaaaaaaaacataataatataaaaacaagctAAAGCTCCTAAAGGTTTAAAGAAACTTCACTGAGTGTGGCTTACCAGGCATCAGTATTGGATAAACAGATTATATTATTGTATCTCTGCCTGTTTGGTTTACAAGAGTTTGCCCCACCCATTTCACACTGATGTTATAAAGTGTGAAAGCCTATGTTGCAGGTTTAGTTAGCCAGTCAAAACATTTGTtgtgaaaaaacaaaattataactgtttttgtttcatAACCCCAAACGTCAAAAGCACAATTCCAATGCTATCCCACAAAATGAATTTAAGGGTTCTATATAcattatgtatacatttttttttaacattcatacGTCATTATCTAAAGAATCAATCATCAACcgtcaaaaagtttttttttttttaagttatcaGAAGTGGTTCTTTTTCTGTGAGAGTGTTGCTGCCTCGGACTCAAGTTTTCCATGATGGTGATAATGCTGTAGCATTCTGCACTAGCGCGGATACTCCTCAATCCAGAAACACAGAAATTTGTGAATTTCTGACAGACATTAACAGAACTTAGAATTAACAGATGTGCACAATCTacataaatgctattttttaagaTGTTTCTGATTTTACTCTTTGCCTGAACCACCCAAAGAACTATTTTTGCTGTAGGAAAATAAGGCTGAAGATGAACACAGTACCTGCTATGAACCTCCAAACACTGGGCCACTGGAAAATGCAGCACAATAGACTGGTGCCTGCCTGTGGTGATGGATTTTTTTGAGGCCAAAGCAAAGCTTTTGTAACAAAATACAAAGCTGTTAAACTCTGCTCACATGTTCTCTCTTCgctaaaacaatgtaaaagaTTGAGGAATACCTCCCTCCTCAGGCTGATTATAGCTGTTTGAGGTTCACACTAGTTGTGCTTCCCAGTGGCTCTCGCTGTTTCttgattttgaaataaaaatgttatgctgttggtttggtttttaatgacTGTCTCCACTGTGGATGATCTCGTCCCTCGCTGCGGTGAAactgactagcgctgtcacagtttcgtaaaaaaaaacaggctttttCCGTGCTGTACTGtttattaacataattaaaacaGATTTCGTTTTTTCAACTGTTTGTGAA

Function

NR:

description
PREDICTED: zinc finger protein OZF-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU48695 False 1050 lncRNA 0.36 2 13502246 13520560
XM_007260023.3 True 3721 mRNA 0.44 6 13514311 13520702

Neighbor

gene id symbol gene type direction distance location
arg1 arg1 coding upstream 30282 13460651 ~ 13471964 (+)
heatr1 heatr1 coding upstream 42275 13423037 ~ 13459971 (+)
LOC103038526 NA coding upstream 142958 13352855 ~ 13359288 (+)
psme2 psme2,LOC107653260,LOC107716467,LOC107556770,LOC107674582,LOC107551845,LOC107727955 coding upstream 196388 13297548 ~ 13305858 (+)
pmp22 pmp22,LOC107684480 coding upstream 492573 12991143 ~ 13009673 (+)
ccser2 NA coding downstream 5061 13525763 ~ 13630014 (+)
btbd16 NA coding downstream 1102527 14623229 ~ 14645576 (+)
LOC103046321 plekha1 coding downstream 1130948 14651650 ~ 14702499 (+)
LOC103041103 htra1,LOC107660481,LOC107745581 coding downstream 1200177 14720879 ~ 14775197 (+)
LOC103041718 LOC108435036 coding downstream 1278208 14798910 ~ 14822163 (+)
G36175 NA non-coding upstream 24307 13475141 ~ 13477939 (+)
G36177 NA non-coding upstream 27452 13474154 ~ 13474794 (+)
G36166 NA non-coding upstream 107666 13392645 ~ 13394580 (+)
G36155 NA non-coding upstream 165812 13325935 ~ 13336434 (+)
G36154 avl9 non-coding upstream 176676 13323174 ~ 13325570 (+)
G36244 NA non-coding downstream 40426 13561128 ~ 13564733 (+)
G36273 NA non-coding downstream 141728 13662430 ~ 13662847 (+)
G36276 NA non-coding downstream 156111 13676813 ~ 13677131 (+)
G36298 NA non-coding downstream 289040 13809742 ~ 13810238 (+)
LOC111192373 grid1,LOC105909129 non-coding downstream 342593 13863295 ~ 13974734 (+)
G35995 NA other upstream 799190 12702305 ~ 12703056 (+)
bnip3 bnip3,LOC107553688,LOC107653114,LOC107582186,LOC107706607 other upstream 935305 12111690 ~ 12566941 (+)
G35967 NA other upstream 1131284 12366540 ~ 12370962 (+)
G35903 NA other upstream 1700042 11801458 ~ 11802204 (+)
dock1 dock1,LOC107740868 other upstream 2500441 10747637 ~ 11001805 (+)
G36371 NA other downstream 942435 14463137 ~ 14463639 (+)
LOC107197918 NA other downstream 1044223 14564925 ~ 14567912 (+)
G36439 LOC103041415 other downstream 1268678 14789380 ~ 14790833 (+)
LOC103028998 pyyb,LOC103028998,LOC108410797,LOC107745683,LOC107569181,LOC107684781,LOC107695522,LOC107753323,LOC107560546 other downstream 1912127 15432829 ~ 15440157 (+)
cabcoco1 NA other downstream 2693088 16213790 ~ 16233839 (+)

Expression


Co-expression Network