G36298


Basic Information

Item Value
gene id G36298
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 13809742 ~ 13810238 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU48845
ACGAGTTTCTTGAGTTCAGTTAAAACTCTGTCTGCTCTTCCTCAGTAAGGCCCAGTCTGCACTGGGTACGGCTGTGAGGGGGAGACAGATAAGAAATATGCTGAGTCATACCAGGTGTCTAAAGGTGGTGCTTAAAGCCCCCACCTTTGTTCacccaaatactgtataaaagtgtgtgtattcCTCTGTGTTTTCAGAAGATCGGAGCTTCCTGACTGATAGAACAATAAAAAGATCAACTTAGAACTTCAGAATGACCCGACTTCTCCTTTCTTTGACTCAAGGCACTCGTCTGttatttttatcttctttcttttgaatttaaaacttttgtagtgatgcatgactagataATTTTTAAGAGTCTATTTTAA
>TU48846
ACGAGTTTCTTGAGTTCAGTTAAAACTCTGTCTGCTCTTCCTCAGTAAGGCCCAGTCTGCACTGGGTACGGCTGTGAGGGGGAGACAGATAAGAAATATGCTGAGTCATACCAGGTGTCTAAAGGTGGTGCTTAAAGCCCCCACCTTTGTTCacccaaatactgtataaaagtgtgtgtattcCTCTGTGTTTTCAGAAGATCGGAGCTTCCTGACTGATAGAACAATAAAAAGATCAACTTAGAACTTCAGAATGACCCGACTTCTCCTTTCTTTGACTCAAGGCACTCGTCTGttatttttatcttctttcttttgaatttaaaacttttgtagtgatgcatgactagataATTTTTAAGAGTCTATTTTAAGATAGCCCAAGGCTTCCCTTTAAGGGAGGCCAAGAGTCGTCAGATTACGAACGACA
>TU48847
AATTAGGATATTAGGGATCAATATATGCTATATTACTCATATATTAGTACAATTTGGCCATATATGAACGAGTTTCTTGAGTTCAGTTAAAACTCTGTCTGCTCTTCCTCAGTAAGGCCCAGTCTGCACTGGGTACGGCTGTGAGGGGGAGACAGATAAGAAATATGCTGAGTCATACCAGGTGTCTAAAGGTGGTGCTTAAAGCCCCCACCTTTGTTCacccaaatactgtataaaagtgtgtgtattcCTCTGTGTTTTCAGAAGATCGGAGCTTCCTGACTGATAGAACAATAAAAAGATCAACTTAGAACTTCAGAATGACCCGACTTCTCCTTTCTTTGACTCAAGGCACTCGTCTGttatttttatcttctttcttttgaatttaaaacttttgtagtgatgcatgactagataATTTTTAAGAGTCTATTTTAAGATAGCCCAAGGCTTCCCTTTAAGGGAGGCCAAGAGTCGTCAGATTACGAACGACA
>TU48848
AATTAGGATATTAGGGATCAATATATGCTATATTACTCATATATTAGTACAATTTGGCCATATATGAACGAGTTTCTTGAGTTCAGTTAAAACTCTGTCTGCTCTTCCTCAGTAAGGCCCAGTCTGCACTGGGTACGGCTGTGAGGGGGAGACAGATAAGAAATATGCTGAGTCATACCAGGTGTCTAAAGGTGGTGCTTAAAGCCCCCACCTTTGTTCacccaaatactgtataaaagtgtgtgtattcCTCTGTGTTTTCAGAAGATCGGAGCTTCCTGACTGATAGAACAATAAAAAGATCAACTTAGAACTTCAGAATGACCCGACTTCTCCTTTCTTTGACTCAAGGCACTCGTCTGttatttttatcttctttcttttgaatttaaaacttttgtagtgatgcatgactagataATTTTTAAGAGTCTATTTTAA

Function

GO:

id name namespace
GO:0031667 response to nutrient levels biological_process
GO:0009991 response to extracellular stimulus biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU48845 False 374 lncRNA 0.39 1 13809809 13810182
TU48846 False 430 lncRNA 0.41 1 13809809 13810238
TU48847 True 497 lncRNA 0.39 1 13809742 13810238
TU48848 False 441 lncRNA 0.37 1 13809742 13810182

Neighbor

gene id symbol gene type direction distance location
ccser2 NA coding upstream 179728 13525763 ~ 13630014 (+)
nudt13 nudt13 coding upstream 300850 13501047 ~ 13508892 (+)
arg1 arg1 coding upstream 337778 13460651 ~ 13471964 (+)
heatr1 heatr1 coding upstream 349771 13423037 ~ 13459971 (+)
LOC103038526 NA coding upstream 450454 13352855 ~ 13359288 (+)
btbd16 NA coding downstream 812991 14623229 ~ 14645576 (+)
LOC103046321 plekha1 coding downstream 841412 14651650 ~ 14702499 (+)
LOC103041103 htra1,LOC107660481,LOC107745581 coding downstream 910641 14720879 ~ 14775197 (+)
LOC103041718 LOC108435036 coding downstream 988672 14798910 ~ 14822163 (+)
get4 get4 coding downstream 1013415 14823653 ~ 14834347 (+)
G36276 NA non-coding upstream 132611 13676813 ~ 13677131 (+)
G36273 NA non-coding upstream 146895 13662430 ~ 13662847 (+)
G36244 NA non-coding upstream 245009 13561128 ~ 13564733 (+)
G36175 NA non-coding upstream 331803 13475141 ~ 13477939 (+)
G36177 NA non-coding upstream 334948 13474154 ~ 13474794 (+)
LOC111192373 grid1,LOC105909129 non-coding downstream 53057 13863295 ~ 13974734 (+)
LOC111192374 NA non-coding downstream 155197 13965435 ~ 13970081 (+)
G36322 NA non-coding downstream 581066 14391304 ~ 14443156 (+)
G36370 NA non-coding downstream 651904 14462142 ~ 14462391 (+)
G36372 NA non-coding downstream 668580 14478818 ~ 14479322 (+)
LOC103039668 LOC108435045 other upstream 289040 13502246 ~ 13520702 (+)
G35995 NA other upstream 1106686 12702305 ~ 12703056 (+)
bnip3 bnip3,LOC107553688,LOC107653114,LOC107582186,LOC107706607 other upstream 1242801 12111690 ~ 12566941 (+)
G35967 NA other upstream 1438780 12366540 ~ 12370962 (+)
G35903 NA other upstream 2007538 11801458 ~ 11802204 (+)
G36371 NA other downstream 652899 14463137 ~ 14463639 (+)
LOC107197918 NA other downstream 754687 14564925 ~ 14567912 (+)
G36439 LOC103041415 other downstream 979142 14789380 ~ 14790833 (+)
LOC103028998 pyyb,LOC103028998,LOC108410797,LOC107745683,LOC107569181,LOC107684781,LOC107695522,LOC107753323,LOC107560546 other downstream 1622591 15432829 ~ 15440157 (+)
cabcoco1 NA other downstream 2403552 16213790 ~ 16233839 (+)

Expression


Co-expression Network