LOC107197918


Basic Information

Item Value
gene id LOC107197918
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 14564925 ~ 14567912 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU48952
tttttattcgAGTTAAAATTATGTACAAGTAACCAAAGACATCATTTCTGAAATTGGTACAAAGTTCAGGTTCCTGCAGTTGGCTTTGGATGCCTCTTTAATTTCACCTCAAACACAACTGAGAAAAAtgctgtataaaataaaaataagatcgGATTCTGAAAAGTAGTCTATCATTCTAGATTTCCAATAGCcaatatttacagaaatatgTACATTTGTGTGGTTCCATTAATATTCCAGAATTTGCTAATTCAAAAAACATTGGGATGTTTAGCGTGTTGGATACAGccctgacagagagagagaaaaacacacacacacacacgcacacacatacacgatGACACCACTGTTTCTGGATCAGCCCAAGGACCAGCAGAACAGTCTGCagcagacaaacaaaaaaattaaaaaaaactaacagaAAAAGCAATACATATTTTGGAAATACAATTGAAAAGAAGGTAAAATAAGACAATtaagatttaatattttatatctattCTAAGTCAATTTCCAAATTCACCAAACAGGGGAGACTTTTCAAATTTTAAATGATGGAAAAAGTGCACAGGGGCTTTTTGCATTGTACGAGAGAGAGTAGCGAACTTGTCAGaaacagcatatatatatatgaagtgGATATTTGTAGGATGTCTTTGTATTAACTTGGAAGCGTGAACATggggcaaaagaaaaaaaaaaaagatgaacacACCGTGTCTGAACTTGGTTTAAAAAAACTGGCCTGTGGAGAGATGACACAACTTCAAGTGCTTTATGGAAATGTAACTTTAAGATTAAGATATTTTGATGTACCCTTGcattgaaataaattaataacaacaataattaaACAAGGAAAACTGAGCTGGGCACTTCAGCTTATTATCTCAAATACCATTAATAAcattgggtgtgtgtgtgttgaggtcaTTCAAATACAGGAGAACACAAACGGATTTGCGATTTGTTAAGATTTTAACGTTTCAGCTTTCATTTGACTTTGCATACAACACTAAGGAAAGCATGCtgcgtgattttttttttatagcttctGTTGGGAATTCTCAGTGATGCGCTTATAATCACGCAAATCCCTGAAAGAGATTAGGGACGTGATGCCCAGGTCTTTGACACACATGGTACATGGGGTGAGACTTCTAAAACTGAGCTACCACCACcagttatacaaaaaaaaaaaaagaaaaaaaaaaaaaaaaacaggaaagtaggataaaataaaaaacaaggagaatctgtgtagattctGCTGCAGGTATGTGCATGTATTTTTATGAGAGaggaaaaacagggcaaagactCGAAGAGTCTGTAACGAGCAAGTCAGAGCAGCACTCGATCAAAGCTATCCATCGTTTGTGGCGGCTGGGCGAGCACTATTGATCGGGGAGGGAGATGGAGAGGTTAACGAGAAACACAGCATAGCAGAGTAACATTCTTACAGGGCACAATAAGAAAATGGGTTCTTTTGAAGGCGAGGAGAATTCTGACAGTCTTTCCCTGTTGCACTGCGGTCAATgtatgaatttaaaaaaaaaaaaggaaatcaaaaAACCCAATAgagagaagaaacaaaaaaaaaaaaaagaaaaaaaaaaaaaaaaagagaagaaacagGAGAATTTCATTCAACATCAGCCATCTCAAAGCATCGAAAGAGTCTTCAAAACGTCAAAAGGGCCATGATGTTTGTGGTTGGTGGGGGGCGGGTTAATAGTGCTGGTGCTCTCAGGGGTGGATTTCTCTCCAGTGCGTTCAGCAAGGTGTGTGCTCCGGCGCAAACGTGTGTTTGTTGAAGGAAGGTGAGCTCTGCTGATGCGCCAGCACTAGCAGTGCTCCAAGTAATCGATGACCCGAGAGATGGATTTCTGCCCCGCCGTG
>XM_022669156.1
TTTTGATGAGCTTGGTTTGCGCACTCCCCGCAGTCATTATCAAAGGGACTCTTCATCTCTATTCACGTCTGCCCGCACACGACCATCGGCACTACACCACGCCCCCCTCGCGGCAGCAGCCACACATAGAAGGGGCTTGGCAATAAATACCGCCTCCAAACCCAAAAGAGAGGGCAAGATGATGTTGGAAGCTTCTGGGGAAAGCATGGCGACGGCTCAACACAGCTCTTACAGGCCGCTGCTCTTGCTGCGAGACACTGATTCCCAACACCGGTGGAACATCGAAGATACGGCGGAGGTCAAGGCGATGTTGTGCAGTACTTGGACAGATGATGGGCCACAGATCCACAGGCCTCACTGCGATCCTTGCATTGCGGCAGAGCAAGACCAGTGTGCCCTGGCCAGGGCACGAAGACGGCGGAGGCTGGCGGCCAATGCAAGGGAGCGCAGAAGGATGCTGGGCCTGAACGTGGCTTTCGACAGGCTGAGGAGCGTCATCCCCAACGTGGAGAGTGCCAGAAAGCTGTCAAAGTCGGAGACACTCCAGATGGCGCAGATCTACATCAGTACACTGAGCGAGCTGCTGCAGGGACAGGACAGTGAGTGCGGACAGTGGCGCGCTGCAGCACAGAGGGATCACGCAGGACAGCGACAGCAAGCCACAGCAGTACAAGGAGAACAGACACAGCAGAGCGTCGAACAGAACACCTCCCCACATCAGAATACCGTTCAGGAACACGTCGTAGACACTGTCCGGCCGCACATGGAGCGCATGGAGCGCTGGGAAAGAAGCAACGGCGCCAAGTAAAATGTCTACAGAacgtgttttacatttttttaatgtaggcTCTATATTGCACTTTGTTAGTGATAATTTATGTAATAATGATGATCAGGTCATGATTGACAAagactaaataaaatgttttttaaaaaaagaaagaaaatgaaaaaacaactcGTGTTGAATACATCACACTGGTCCACGAAAACCGCAGAAAGCTGACAAGATGTATTGaaagtagcaatttttattcgAGTTAAAATTATGTACAAGTAACCAAAGACATCATTTCTGAAATTGGTACAAAGTTCAGGTTCCTGCAGTTGGCTTTGGATGCCTCTTTAATTTCACCTCAAACACAACTGAGAAAAAtgctgtataaaataaaaataagatcgGATTCTGAAAAGTAGTCTATCATTCTAGATTTCCAATAGCcaatatttacagaaatatgTACATTTGTGTGGTTCCATTAATATTCCAGAATTTGCTAATTCAAAAAACATTGGGATGTTTAGCGTGTTGGATACAGccctgacagagagagagaaaaacacacacacacacacgcacacacatacacgatGACACCACTGTTTCTGGATCAGCCCAAGGACCAGCAGAACAGTCTGCagcagacaaacaaaaaaattaaaaaaaactaacagaAAAAGCAATACATATTTTGGAAATACAATTGAAAAGAAGGTAAAATAAGACAATtaagatttaatattttatatctattCTAAGTCAATTTCCAAATTCACCAAACAGGGGAGACTTTTCAAATTTTAAATGATGGAAAAAGTGCACAGGGGCTTTTTGCATTGTACGAGAGAGAGTAGCGAACTTGTCAGaaacagcatatatatatatgaagtgGATATTTGTAGGATGTCTTTGTATTAACTTGGAAGCGTGAACATggggcaaaagaaaaaaaaaaaagatgaacacACCGTGTCTGAACTTGGTTTAAAAAAACTGGCCTGTGGAGAGATGACACAACTTCAAGTGCTTTATGGAAATGTAACTTTAAGATTAAGATATTTTGATGTACCCTTGcattgaaataaattaataacaacaataattaaACAAGGAAAACTGAGCTGGGCACTTCAGCTTATTATCTCAAATACCATTAATAAcattgggtgtgtgtgtgttgaggtcaTTCAAATACAGGAGAACACAAACGGATTTGCGATTTGTTAAGATTTTAACGTTTCAGCTTTCATTTGACTTTGCATACAACACTAAGGAAAGCATGCtgcgtgattttttttttatagcttctGTTGGGAATTCTCAGTGATGCGCTTATAATCACGCAAATCCCTGAAAGAGATTAGGGACGTGATGCCCAGGTCTTTGACACACATGGTACATGGGGTGAGACTTCTAAAACTGAGCTACCACCACcagttatacaaaaaaaaaaaaa

Function

GO:

id name namespace
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU48952 False 1908 lncRNA 0.38 2 14565953 14567912
XM_022669156.1 True 2237 mRNA 0.43 1 14564925 14567161

Neighbor

gene id symbol gene type direction distance location
ccser2 NA coding upstream 934911 13525763 ~ 13630014 (+)
nudt13 nudt13 coding upstream 1056033 13501047 ~ 13508892 (+)
arg1 arg1 coding upstream 1092961 13460651 ~ 13471964 (+)
heatr1 heatr1 coding upstream 1104954 13423037 ~ 13459971 (+)
LOC103038526 NA coding upstream 1205637 13352855 ~ 13359288 (+)
btbd16 NA coding downstream 55317 14623229 ~ 14645576 (+)
LOC103046321 plekha1 coding downstream 83738 14651650 ~ 14702499 (+)
LOC103041103 htra1,LOC107660481,LOC107745581 coding downstream 152967 14720879 ~ 14775197 (+)
LOC103041718 LOC108435036 coding downstream 230998 14798910 ~ 14822163 (+)
get4 get4 coding downstream 255741 14823653 ~ 14834347 (+)
G36372 NA non-coding upstream 85603 14478818 ~ 14479322 (+)
G36370 NA non-coding upstream 102534 14462142 ~ 14462391 (+)
G36322 NA non-coding upstream 121769 14391304 ~ 14443156 (+)
LOC111192373 grid1,LOC105909129 non-coding upstream 590191 13863295 ~ 13974734 (+)
LOC111192374 NA non-coding upstream 594844 13965435 ~ 13970081 (+)
G36382 LOC108435041,LOC107716480,LOC107660482,LOC107745560 non-coding downstream 12622 14580534 ~ 14589788 (+)
LOC111192375 NA non-coding downstream 48811 14616723 ~ 14618634 (+)
G36437 NA non-coding downstream 218138 14786050 ~ 14787301 (+)
G36442 LOC103041415 non-coding downstream 225559 14793471 ~ 14794336 (+)
G36499 NA non-coding downstream 469866 15037778 ~ 15037977 (+)
G36371 NA other upstream 101286 14463137 ~ 14463639 (+)
LOC103039668 LOC108435045 other upstream 1044223 13502246 ~ 13520702 (+)
G35995 NA other upstream 1861869 12702305 ~ 12703056 (+)
bnip3 bnip3,LOC107553688,LOC107653114,LOC107582186,LOC107706607 other upstream 1997984 12111690 ~ 12566941 (+)
G35967 NA other upstream 2193963 12366540 ~ 12370962 (+)
G36439 LOC103041415 other downstream 221468 14789380 ~ 14790833 (+)
LOC103028998 pyyb,LOC103028998,LOC108410797,LOC107745683,LOC107569181,LOC107684781,LOC107695522,LOC107753323,LOC107560546 other downstream 864917 15432829 ~ 15440157 (+)
cabcoco1 NA other downstream 1645878 16213790 ~ 16233839 (+)
sun1 NA other downstream 2432470 17000382 ~ 17040957 (+)
phf5a phf5a,PHF5A,LOC107584099,LOC102780084,LOC106609350 other downstream 2633585 17201497 ~ 17205033 (+)

Expression


Co-expression Network