LOC111192375


Basic Information

Item Value
gene id LOC111192375
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 14616723 ~ 14618634 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU48971
TTTTATCATCGGTTAATTTGTAAAATTagggtttaaaaatattatttaaaacattaatatatttttgtttatctaattaattttaaatgaacGGGCAATTAAAATTATGTATGctcacaaatgaaaaaaataaaaactgtaactattttttttttgataatagaGTAATCTgttgattttattttcattgtttatttactattaatcaaataaaaagcgaaaaaaaattgatttagaagattttatgatataatatgtggattatggctttAGGTAAATTCAGTTTTACATATTGCCCTCAgaacaccagaatgcagctaGCGGCTCAATGCTAGGTAATAGCTAAACTCAGCAGGAACGATCGGAGGGATTTCTGAGTTGAATTAATCAAAAGGTTTGATATTAGAATGATGTTACTCTGCTGGTGAGATAGGGTACGTTCTGCTGtttgaaaaaataatatgtGTATTATGACTGTACATTATtctatatatatctgtatgtaTAGCTACTGTTTAAGCACAGGATCATCAGGTTTATAAAGATCCCTCCCCATCTCCTAGCAACCAGTGTATTCAGGCTAAACAAGCGTGCACTGAGGGTTAAAGCAGGTGCCATGGTGACCAACTTTCCGCTCCTGTTTGGTCAACTGTAACCTGCTGCACGACAATGCCAAGCACCTGCTTTTACCCACACGGCAACGGACAATGGCCTTCACCTGGTCCTCCTCACCGTCAGCGCAGGCAGGTAGGCTGCACCAACCTCTG
>XR_002649876.1
ctattaatcaaataaaaagcgaaaaaaaattgatttagaagattttatgatataatatgtggattatggctttAGGTAAATTCAGTTTTACATATTGCCCTCAgaacaccagaatgcagctaGCGGCTCAATGCTAGGTAATAGCTAAACTCAGCAGGAACGATCGGAGGGATTTCTGAGTTGAATTAATCAAAAGCTACTGTTTAAGCACAGGATCATCAGGTTTATAAAGATCCCTCCCCATCTCCTAGCAACCAGTGTATTCAGGCTAAACAAGCGTGCACTGAGGGTTAAAGCAGGTGCCATGGTGACCAACTTTCCGCTCCTGTTTGGTCAACTGTAACCTGCTGCACGACAATGCCAAGCACCTGCTTTTACCCACACGGCAACGGACAATGGCCTTCACCTGGTCCTCCTCACCGTCAGCGCAGGCAGGTAGGCTGCACCAACCTCTG
>XR_002649877.1
CGTAGTTTTTGTACCCAATAACTGTAGTCCATCTTCGTCAAATACATGTTTACATCCGCACTGACCCATAAAACGCTTCGAGAATGATGTAGAGCTGCACAGGCTTCTCCTAGCAAGATTTaacaccagaatgcagctaGCGGCTCAATGCTAGGTAATAGCTAAACTCAGCAGGAACGATCGGAGGGATTTCTGAGTTGAATTAATCAAAAGCTACTGTTTAAGCACAGGATCATCAGGTTTATAAAGATCCCTCCCCATCTCCTAGCAACCAGTGTATTCAGGCTAAACAAGCGTGCACTGAGGGTTAAAGCAGGTGCCATGGTGACCAACTTTCCGCTCCTGTTTGGTCAACTGTAACCTGCTGCACGACAATGCCAAGCACCTGCTTTTACCCACACGGCAACGGACAATGGCCTTCACCTGGTCCTCCTCACCGTCAGCGCAGGCAGGTAGGCTGCACCAACCTCTG
>XR_002649878.1
TGTAGTCCATCTTCGTCAAATACATGTTTACATCCGCACTGACCCATAAAACGCTTCGAGAATGATGTAGAGCTGCACAGGCTTCTCCTAGCAAGATTTCTACTGTTTAAGCACAGGATCATCAGGTTTATAAAGATCCCTCCCCATCTCCTAGCAACCAGTGTATTCAGGCTAAACAAGCGTGCACTGAGGGTTAAAGCAGGTGCCATGGTGACCAACTTTCCGCTCCTGTTTGGTCAACTGTAACCTGCTGCACGACAATGCCAAGCACCTGCTTTTACCCACACGGCAACGGACAATGGCCTTCACCTGGTCCTCCTCACCGTCAGCGCAGGCAGGTAGGCTGCACCAACCTCTG
>XR_002649879.1
attaatcaaataaaaagcgaaaaaaaattgatttagaagattttatgatataatatgtggattatggctttAGGTAAATTCAGTTTTACATATTGCCCTCAgaacaccagaatgcagctaGCGGCTCAATGCTAGGTAATAGCTAAACTCAGCAGGAACGATCGGAGGGATTTCTGAGTTGAATTAATCAAAAGGTTTGATATTAGAATGATGTTACTCTGCTGGTGAGATAGGCAACCAGTGTATTCAGGCTAAACAAGCGTGCACTGAGGGTTAAAGCAGGTGCCATGGTGACCAACTTTCCGCTCCTGTTTGGTCAACTGTAACCTGCTGCACGACAATGCCAAGCACCTGCTTTTACCCACACGGCAACGGACAATGGCCTTCACCTGGTCCTCCTCACCGTCAGCGCAGGCAGGTAGGCTGCACCAACCTCTG

Function

GO: NA

KEGG:

id description
ko05016 Huntington disease

RNA

RNA id representative length rna type GC content exon number start site end site
TU48971 True 767 lncRNA 0.35 3 14616850 14618634
XR_002649876.1 False 455 lncRNA 0.45 4 14617048 14618634
XR_002649877.1 False 472 lncRNA 0.48 5 14616723 14618634
XR_002649878.1 False 358 lncRNA 0.50 4 14616745 14618634
XR_002649879.1 False 438 lncRNA 0.44 4 14617050 14618634

Neighbor

gene id symbol gene type direction distance location
ccser2 NA coding upstream 986709 13525763 ~ 13630014 (+)
nudt13 nudt13 coding upstream 1107831 13501047 ~ 13508892 (+)
arg1 arg1 coding upstream 1144759 13460651 ~ 13471964 (+)
heatr1 heatr1 coding upstream 1156752 13423037 ~ 13459971 (+)
LOC103038526 NA coding upstream 1257435 13352855 ~ 13359288 (+)
btbd16 NA coding downstream 4595 14623229 ~ 14645576 (+)
LOC103046321 plekha1 coding downstream 33016 14651650 ~ 14702499 (+)
LOC103041103 htra1,LOC107660481,LOC107745581 coding downstream 102245 14720879 ~ 14775197 (+)
LOC103041718 LOC108435036 coding downstream 180276 14798910 ~ 14822163 (+)
get4 get4 coding downstream 205019 14823653 ~ 14834347 (+)
G36382 LOC108435041,LOC107716480,LOC107660482,LOC107745560 non-coding upstream 26935 14580534 ~ 14589788 (+)
G36372 NA non-coding upstream 137401 14478818 ~ 14479322 (+)
G36370 NA non-coding upstream 154332 14462142 ~ 14462391 (+)
G36322 NA non-coding upstream 173567 14391304 ~ 14443156 (+)
LOC111192373 grid1,LOC105909129 non-coding upstream 641989 13863295 ~ 13974734 (+)
G36437 NA non-coding downstream 167416 14786050 ~ 14787301 (+)
G36442 LOC103041415 non-coding downstream 174837 14793471 ~ 14794336 (+)
G36499 NA non-coding downstream 419144 15037778 ~ 15037977 (+)
G36503 med24,LOC107716488,LOC107598039,LOC107706820,LOC107678252,LOC107560528 non-coding downstream 434408 15053042 ~ 15064113 (+)
G36510 med24,LOC107716488,LOC107660474 non-coding downstream 459150 15077784 ~ 15081345 (+)
LOC107197918 NA other upstream 48811 14564925 ~ 14567912 (+)
G36371 NA other upstream 153084 14463137 ~ 14463639 (+)
LOC103039668 LOC108435045 other upstream 1096021 13502246 ~ 13520702 (+)
G35995 NA other upstream 1913667 12702305 ~ 12703056 (+)
G35967 NA other upstream 2245761 12366540 ~ 12370962 (+)
G36439 LOC103041415 other downstream 170746 14789380 ~ 14790833 (+)
LOC103028998 pyyb,LOC103028998,LOC108410797,LOC107745683,LOC107569181,LOC107684781,LOC107695522,LOC107753323,LOC107560546 other downstream 814195 15432829 ~ 15440157 (+)
cabcoco1 NA other downstream 1595156 16213790 ~ 16233839 (+)
sun1 NA other downstream 2381748 17000382 ~ 17040957 (+)
phf5a phf5a,PHF5A,LOC107584099,LOC102780084,LOC106609350 other downstream 2582863 17201497 ~ 17205033 (+)

Expression


Co-expression Network