G36417


Basic Information

Item Value
gene id G36417
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 14704543 ~ 14705231 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU49012
tGAGCATTATATTCAGCATCTAAGCATTTTTAAAGAAGATTTTAAACGCCAAAACTTTTAACAGTATGAAGAAAAAGTAACCTAACAGTCTAAAAGAGACAGTTGCACCTTTTATCAGAGGTTGCTGAACGgtgtcaatattttatttcatcttCCAGACGACAGAACTCCATGAACAAACTCAGATCAATGAGACCCTTTAAACTCAGCAGGGCACTCAAAAAGGCGCATCTAAGGCCACAACCTGTTTCAGATGTTCAGAACAAGTAATGGAAACCCCATGGTCTCTAGTGTCCATCTAGGCAGCATCTGAGTGGAAGTTCAAAGCTTTCAGAAGTAGTTTTCACCTGAAGAAGTACAGCAGAGTACATCCACAGGCCTGAATGTCCTGAAGGCCAGGTTACTTACTGTAGACAAGAACACAACTCACCATGAAATTGGCCTGGTGGAAGTTGTGTGGAAGTTTACCAGCTTCTGGTGCATAGGACCAGTGACCAGTAGAGGGCAGTATGTGCACAtctgaaaacactgtttaaagttatttgtgttatttaatatacagctctggataaaattagtttctgaatcagtttctctgattttgcaatttataggtatatgtttaagtaaaatgaacattgttttattttatagactatggacaacattactcctaaattcctaataaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU49012 True 689 lncRNA 0.38 1 14704543 14705231

Neighbor

gene id symbol gene type direction distance location
wapl LOC108435041 coding downstream 87921 14565938 ~ 14616622 (-)
grid1 grid1,grid1b,LOC106578986,LOC106589364,LOC103147060 coding downstream 265314 13882457 ~ 14439229 (-)
dnajc9 dnajc9,LOC107684784,LOC107751706 coding downstream 1190305 13508956 ~ 13514238 (-)
LOC103043889 ppp1r9bb,LOC107741705,LOC107684769,LOC107713069,LOC107675672 coding downstream 1283601 13391819 ~ 13420942 (-)
cdh20 cdh20 coding downstream 1319280 13361736 ~ 13385263 (-)
c4h16orf62 cunh16orf62,c13h16orf62,zgc:163107,cssa28h16orf62 coding upstream 129221 14834452 ~ 14861783 (-)
trnal-caa_1 NA coding upstream 246406 14951637 ~ 14951749 (-)
trnal-caa_2 NA coding upstream 246610 14951841 ~ 14951953 (-)
trnal-caa_3 NA coding upstream 246873 14952104 ~ 14952216 (-)
trnal-caa_4 NA coding upstream 247077 14952308 ~ 14952420 (-)
G36396 NA non-coding downstream 134557 14552745 ~ 14569986 (-)
G36339 NA non-coding downstream 673602 13984417 ~ 14030941 (-)
G36331 NA non-coding downstream 855306 13848974 ~ 13849237 (-)
G36330 NA non-coding downstream 862632 13836865 ~ 13841911 (-)
G36300 NA non-coding downstream 871373 13832923 ~ 13833170 (-)
G36428 NA non-coding upstream 44322 14749553 ~ 14778395 (-)
G36477 NA non-coding upstream 127738 14832969 ~ 14877078 (-)
G36542 NA non-coding upstream 443172 15148403 ~ 15149356 (-)
G36550 NA non-coding upstream 494591 15199822 ~ 15200037 (-)
G36632 NA non-coding upstream 677281 15382512 ~ 15454810 (-)
p4ha1 p4ha1,p4ha1a,LOC107753313,LOC108273903,LOC107560551,LOC107684765 other downstream 1204366 13475166 ~ 13500177 (-)
lsm5 lsm5,LOC107653262,LOC107727957,LOC107674592 other downstream 1393018 13307088 ~ 13311525 (-)
G36074 NA other downstream 1992998 12709808 ~ 12711545 (-)
LOC103036331 NA other downstream 2632116 12067533 ~ 12072427 (-)
clrn3 NA other downstream 3621361 11053659 ~ 11083182 (-)
c4h10orf88 LOC103041415 other upstream 80721 14785952 ~ 14797212 (-)
G36677 NA other upstream 1042169 15747400 ~ 15774593 (-)
LOC103023526 ndua4,ndufa4,LOC103023526,LOC108443163,LOC107745684,LOC107684782,LOC107569184 other upstream 1131874 15837105 ~ 15840516 (-)
LOC103043629 LOC108412394 other upstream 2208339 16913570 ~ 16915285 (-)
G37183 NA other upstream 2310897 17016128 ~ 17018918 (-)

Expression


Co-expression Network