c4h10orf88 (LOC103041415)


Basic Information

Item Value
gene id c4h10orf88
gene name LOC103041415
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 14785952 ~ 14797212 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU49046
ATTGtgtttgctttagtttttttgtgtacCTGACTCAGAATATATTACCGTCCATGTGTATTTATCAATGCTGCTatgtagggctggcccgaacaGCATTTTACACCCATTAAAAAACTCAGGATTTCAGTTCAAAAGCACAAATGGCTTTACCTTTTAAAGTTAACTGTAATGTTAAACGTGTTTACCAGTTATTTTCAGTTGGTGGCAGTTTAATGCAATTAATGTGGCTGAAAAATGATAATTACCAAATAGAGAAGCGCAAAACCATTATAACAAACCAAAAGATGATGTATTGTGTATTGAAATAATTCGGGCCAGCCTTACCactttaaaactctttaaaacttgTTTCTTATATGACATTGACTCTAAGCATACTTCTGCTCCTATTAACACtttgtaaacctgtttttcATGCTTCTGGTTACTGCACTGAACATGCTGGCAGCCATCTCGTTTCTGAGATCTGTACCCGGCTTCTCTAAATTCAATTTTCACATTTACTAAACTCTTCAGTTGAATGTCAGGTTGAATCTAAAGTGTTAAAGcaggtaaaaaaagaaaaaaagggaatcTGCTGTTTTGGTCATCAAAGGTTTTTATTTGAAAGAACTGTCATTTAAAACGTTGTCATTCATGTGTTTTGACTTGATTTGTCGTTGATGTTCTCTTAATTAATGGTTTTCATAAAACAACtaaggacaaaaaaaagat
>XM_007260030.3
TCCGGCTCTCGGGTCCTGTGGCTGTAGGTGAGTCAGTCGCAGTGTGATGAGTGAGAGGCAGCAGCACCTCGGTGCAGGATGAGTGTGAGTAAAGGAGCTGTAGTGTGTGGAATCTCCTCGTGGGTCTGCTCCTCCAGCTCTCAGATCTCAGACATCATCACCACTGTACCAGAACCTCAGCAACCCCAACAGCAGCACCAGGGGGGAGATCAGCAGGATGTAGAGGATGAGCTCGGCCCTGCTGCACAGTGGGAACCTGTGTGTTTGGAGCGTGCTGAGGAGGGGTCACCGTGTGTCATCACGCTGCTGTGTAAGCCTGATTCGGGGGCTGTTATCAGCAGTATTGTGGTGGTGAGTGAGGCGCGCACCGTGGAGGTGTACTCTCTCTCTGGAGATTACTGCGGTACCTGTCGGGGGGAGGAGGACCACCGATGGAACAATGACGGCTCTGAGGAAAAAAGGCCTTTCTACAGGAGTCAGGTGGTGCTGGAAAGTCCTGTTGCATCCTGCGAAGTAAAGATGCTTTCTTTGGGTGGGCGCTCAAATGTAGCTGTGGCCCAACTGGGCGTGGGGTTGCGGTTTCTCCAGGCCACTCACTGTCCGCTGAGCACAAGCCCAGGCATCGACCTTCAGCGCGTCCAAGCCATGATGGAACAGATGGGCACCACCCTCTCACCAGGAGCACAGAACCTGATGGAAATGGTGCAGATCCAGCAAAAGAATAAAGCTGATGTCCTTGGTGGATTCCTGCCTCTTCTTATGGGTGGAGGTGCACTGGCCTGTCTGGCCAAGGGCTTGCCATTCGCCCAAGAGTCCAAAGCTGTGGGAGAAACGGACTCTCAGGGGGCAGAAGCACCGGCAGATGGAAACCCAGGACATGGAACCCATCCTCCTTCCTCCTTCAGCAACCAGAGCGGTGTTCCAGACGCTGTGTCAGCCCTGCTAGCTGCTCAGGCCGGCCAGCAGAGCCCAGTTAGCTCTGACCTCCTTCCTGTGCTGCAGAGCGTGTGTGGTCAGGTCACTCAGCTCCGTCTGGACGCGGTAAACTCGCCGGAGAAGAGGAGGAACGGAGACCGGGAGGACCACATGTGCTGTGGAGGTCTAGAAAAAGCTATGGAGAAGGTTGTGGAGAAACGCATGGAGGAGCTGGAAAAGAGACTGAAGGAGCACATGGACCAGCGGCTGGACGCCCTTCAGCAGAAACTAGAGCTCACGCTTAAGCAGGCCCTCACACACATGCCCAACCCTGAATAACCACCCACTGCTCTATTAACCAGGAGACACTAAATTAGCATGAACTCCTAATAACACAGTGGGTTTTGCTTTTTATCAGGGGAGGCCTGACTCTAACAGCAGTGGTTTGAAGGAGCGAACTGTTGCTAACCTTTTACCGTTTGACTTTCAGAGATATGGCTAATTGCTGCGGACCTTCACGGTTTGATTAACTCCATTGTGAAACGTTTGAGAAGCCATGTTGGCTCAAAATGCAGAGGAGACGCTAATCTGCACTAACGGTCACTGACTACGGTTTGTTACTGAAGTGATTGGAGCTAAGTGTTCACTGACTGTTCACAGTGAGTGGTAAACGCAGACTTAAGCTGTGCACTAACTGTTCATTCACAACTGTCATTGtgtttgctttagtttttttgtgtacCTGACTCAGAATATATTACCGTCCATGTGTATTTATCAATGCTGCTatgtagggctggcccgaacaGCATTTTACACCCATTAAAAAACTCAGGATTTCAGTTCAAAAGCACAAATGGCTTTACCTTTTAAAGTTAACTGTAATGTTAAACGTGTTTACCAGTTATTTTCAGTTGGTGGCAGTTTAATGCAATTAATGTGGCTGAAAAATGATAATTACCAAATAGAGAAGCGCAAAACCATTATAACAAACCAAAAGATGATGTATTGTGTATTGAAATAATTCGGGCCAGCCTTACCactttaaaactctttaaaacttgTTTCTTATATGACATTGACTCTAAGCATACTTCTGCTCCTATTAACACtttgtaaacctgtttttcATGCTTCTGGTTACTGCACTGAACATGCTGGCAGCCATCTCGTTTCTGAGATCTGTACCCGGCTTCTCTAAATTCAATTTTCACATTTACTAAACTCTTCAGTTGAATGTCAGGTTGAATCTAAAGTGTTAAAGcaggtaaaaaaagaaaaaaagggaatcTGCTGTTTTGGTCATCAAAGGTTTTTATTTGAAAGAACTGTCATTTAAAACGTTGTCATTCATGTGTTTTGACTTGATTTGTCGTTGATGTTCTCTTAATTAATGGTTTTCATAAAACAACtaaggacaaaaaaaagatgaattACTGTTAATAAAGTTTAACTTAATCTGTGTGAAATCTTTTACTCTCCTAGAACCTCTCAAATTAAAATTTTTCCCCAAAA

Function

NR:

description
uncharacterized protein C10orf88 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU49046 False 717 lncRNA 0.34 1 14786037 14786753
XM_007260030.3 True 2430 mRNA 0.47 7 14785952 14797212

Neighbor

gene id symbol gene type direction distance location
wapl LOC108435041 coding downstream 169330 14565938 ~ 14616622 (-)
grid1 grid1,grid1b,LOC106578986,LOC106589364,LOC103147060 coding downstream 346723 13882457 ~ 14439229 (-)
dnajc9 dnajc9,LOC107684784,LOC107751706 coding downstream 1271714 13508956 ~ 13514238 (-)
LOC103043889 ppp1r9bb,LOC107741705,LOC107684769,LOC107713069,LOC107675672 coding downstream 1365010 13391819 ~ 13420942 (-)
cdh20 cdh20 coding downstream 1400689 13361736 ~ 13385263 (-)
c4h16orf62 cunh16orf62,c13h16orf62,zgc:163107,cssa28h16orf62 coding upstream 37240 14834452 ~ 14861783 (-)
trnal-caa_1 NA coding upstream 154425 14951637 ~ 14951749 (-)
trnal-caa_2 NA coding upstream 154629 14951841 ~ 14951953 (-)
trnal-caa_3 NA coding upstream 154892 14952104 ~ 14952216 (-)
trnal-caa_4 NA coding upstream 155096 14952308 ~ 14952420 (-)
G36428 NA non-coding downstream 7557 14749553 ~ 14778395 (-)
G36417 NA non-coding downstream 80721 14704543 ~ 14705231 (-)
G36396 NA non-coding downstream 215966 14552745 ~ 14569986 (-)
G36339 NA non-coding downstream 755011 13984417 ~ 14030941 (-)
G36331 NA non-coding downstream 936715 13848974 ~ 13849237 (-)
G36477 NA non-coding upstream 35757 14832969 ~ 14877078 (-)
G36542 NA non-coding upstream 351191 15148403 ~ 15149356 (-)
G36550 NA non-coding upstream 402610 15199822 ~ 15200037 (-)
G36632 NA non-coding upstream 585300 15382512 ~ 15454810 (-)
G36629 ki67 non-coding upstream 595799 15393011 ~ 15397037 (-)
p4ha1 p4ha1,p4ha1a,LOC107753313,LOC108273903,LOC107560551,LOC107684765 other downstream 1285775 13475166 ~ 13500177 (-)
lsm5 lsm5,LOC107653262,LOC107727957,LOC107674592 other downstream 1474427 13307088 ~ 13311525 (-)
G36074 NA other downstream 2074407 12709808 ~ 12711545 (-)
LOC103036331 NA other downstream 2713525 12067533 ~ 12072427 (-)
clrn3 NA other downstream 3702770 11053659 ~ 11083182 (-)
G36677 NA other upstream 950188 15747400 ~ 15774593 (-)
LOC103023526 ndua4,ndufa4,LOC103023526,LOC108443163,LOC107745684,LOC107684782,LOC107569184 other upstream 1039893 15837105 ~ 15840516 (-)
LOC103043629 LOC108412394 other upstream 2116358 16913570 ~ 16915285 (-)
G37183 NA other upstream 2218916 17016128 ~ 17018918 (-)
crym rac1,RAC1,rac1a,crym,LOC105898786,LOC108412270,LOC108437155,LOC107569188 other upstream 2250395 17047607 ~ 17062947 (-)

Expression


Co-expression Network