G36503 (med24,LOC107716488,LOC107598039,LOC107706820,LOC107678252,LOC107560528)


Basic Information

Item Value
gene id G36503
gene name med24,LOC107716488,LOC107598039,LOC107706820,LOC107678252,LOC107560528
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 15053042 ~ 15064113 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU49121
CCTTTACAAGGTTGTTGGTGAACCAGAAGACTCCACCCATGTGCATCAGACTTTCAAGCAGGTGCAGTGTGCGTGAATCCACCCAACCTTTATCCAGAACCTGGCGGAACTGAGCCTGCAGGGCCTGACGGATGGGCTGGCGGGCAGGCAGGAGGCTCCGGTAGGGGATTGGCTCCTGACCTTCTACGGCTGGACGCAGCGACACACCAGTCTGTTGGAACACGTCTGCGCACATGTGCTCCAAGATGGAGCTCATAATGACCACGCGTTCGTTGTAAAACTGCAGGGTGTTTTCTCCGTACAGAGGAGTCATGAGCTGCCGAATCATAGTCTGAGGCTTCTCTCTCTCGTCCAATCCCAACATCCGAACGTGAGCCACCAACCAGGCCACGGCACAGATGGCCATACTGCACACCTTTCCTTTGATATTATCTGTGATCTTCTGCACAGCCTCTACAGACAGAACTCCGTTCTCCCACGCATTCAGAACCTCCAGGATGGCGGCTGGTGTGGTGAGGCAGATCTCATGCCATTTCATCTGAACCAACTTCATCTCAGAGGAAGTGTTCAGAAGGGCCACGAGGCTCTCCACTTTGCCCGATTCAGGCCGGAAGCAGGGGTGATCCGGGTTCAGAGTTTTCCCTTCTTCCGGCATGCACATCTGCAGCCACGTCTCAAAAAATGGCGTCTCCCCTGATGGACTGGGTTCCGAAAGGATGACCTCTGATCCGTATGTCTGGA

Function

symbol description
med24 Predicted to enable transcription coregulator activity. Acts upstream of or within interstitial cell of Cajal differentiation; nervous system development; and thymus development. Predicted to be located in nucleus. Predicted to be part of mediator complex. Is expressed in brain; gut; and head. Used to study Hirschsprung's disease; intestinal disease; and neuropathy. Orthologous to human MED24 (mediator complex subunit 24).

NR:

description
PREDICTED: C-X-C motif chemokine 10-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU49121 True 741 lncRNA 0.55 5 15053042 15064113

Neighbor

gene id symbol gene type direction distance location
LOC103032173 NA coding upstream 17088 15032389 ~ 15035954 (+)
LOC103032486 lrrc3c,lrrc3ca,LOC107598050,LOC107716457,LOC107660473,LOC107678436 coding upstream 61743 14967880 ~ 14991299 (+)
get4 get4 coding upstream 218695 14823653 ~ 14834347 (+)
LOC103041718 LOC108435036 coding upstream 230879 14798910 ~ 14822163 (+)
LOC103041103 htra1,LOC107660481,LOC107745581 coding upstream 277845 14720879 ~ 14775197 (+)
top2a top2a coding downstream 52711 15116824 ~ 15133253 (+)
gjd3 gjd3 coding downstream 70189 15134302 ~ 15135903 (+)
LOC103030376 raraa,rara,LOC108410801,LOC107678286,LOC107745620,LOC107716487 coding downstream 160339 15224452 ~ 15383888 (+)
LOC103029630 NA coding downstream 328902 15393015 ~ 15406356 (+)
LOC103029312 NA coding downstream 343372 15407485 ~ 15423095 (+)
G36499 NA non-coding upstream 15065 15037778 ~ 15037977 (+)
G36442 LOC103041415 non-coding upstream 258706 14793471 ~ 14794336 (+)
G36437 NA non-coding upstream 265741 14786050 ~ 14787301 (+)
LOC111192375 NA non-coding upstream 434408 14616723 ~ 14618634 (+)
G36382 LOC108435041,LOC107716480,LOC107660482,LOC107745560 non-coding upstream 463254 14580534 ~ 14589788 (+)
G36510 med24,LOC107716488,LOC107660474 non-coding downstream 13671 15077784 ~ 15081345 (+)
G36511 med24,LOC107598039,LOC107660474 non-coding downstream 17451 15081564 ~ 15083940 (+)
G36512 NA non-coding downstream 22243 15086356 ~ 15090376 (+)
LOC111192405 NA non-coding downstream 86058 15150171 ~ 15152128 (+)
G36524 NA non-coding downstream 112993 15177106 ~ 15181078 (+)
G36439 LOC103041415 other upstream 262209 14789380 ~ 14790833 (+)
LOC107197918 NA other upstream 485130 14564925 ~ 14567912 (+)
G36371 NA other upstream 589403 14463137 ~ 14463639 (+)
LOC103039668 LOC108435045 other upstream 1532340 13502246 ~ 13520702 (+)
G35995 NA other upstream 2349986 12702305 ~ 12703056 (+)
LOC103028998 pyyb,LOC103028998,LOC108410797,LOC107745683,LOC107569181,LOC107684781,LOC107695522,LOC107753323,LOC107560546 other downstream 368716 15432829 ~ 15440157 (+)
cabcoco1 NA other downstream 1149677 16213790 ~ 16233839 (+)
sun1 NA other downstream 1936269 17000382 ~ 17040957 (+)
phf5a phf5a,PHF5A,LOC107584099,LOC102780084,LOC106609350 other downstream 2137384 17201497 ~ 17205033 (+)
cby1 cby1 other downstream 2168707 17232820 ~ 17234559 (+)

Expression


Co-expression Network