G36510 (med24,LOC107716488,LOC107660474)


Basic Information

Item Value
gene id G36510
gene name med24,LOC107716488,LOC107660474
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 15077784 ~ 15081345 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU49129
ACCTGCATCCTCTTTATCATCATTAGCTGTTCCACCAGTGGCTGGGTCTCTCCTGTCAGGTTCATGGTCCCCTCCAGCATGATGAATGCGTGAACTGAAGGGAAGGTAGTCTGCACTGGAGGGTCACACTGAATACACACCATCTGAGGAATACTCTTAACAAGAGAGATGCACTCCTCCAGCTTGTTGCTCAGCGTCTGATTGCTCAAACTGCTGAGATTCTCCACCAGTTTGATTAAAGCCTGCTCCACGTTGCTCCAGGAGGCCTGTTCCTCAAGGCGTGCAATGTGCACCAGGGCTCGATTCTTGGTCCGCTGCAGAAGGCTTTCCAGACGTTCCTGGCAGGCACTGAGGCTGGCCTCACCGGCGGGCAGCAATCCAGGTTCTCTCAGCTTCTCGCAGTACCAGGCACATCCCTGCAGGAGCCACACCACGATGCCCAGCAGAGCTCGGCACAGGCCGATGCACTCCTCTGCCTTACCCTGACAGCT
>TU49130
CCATTTGAGCTCCTCCGTTCCCTCAGGGGATTCGATGAGTCCAGTGAAGCAGGCCTTCCAGACCTCCAGAACAAATATAGGAGCAGGAATACGCTGCATCCTCTTTATCATCATTAGCTGTTCCACCAGTGGCTGGGTCTCTCCTGTCAGGTTCATGGTCCCCTCCAGCATGATGAATGCGTGAACTGAAGGGAAGGTAGTCTGCACTGGAGGGTCACACTGAATACACACCATCTGAGGAATACTCTTAACAAGAGAGATGCACTCCTCCAGCTTGTTGCTCAGCGTCTGATTGCTCAAACTGCTGAGATTCTCCACCAGTTTGATTAAAGCCTGCTCCACGTTGCTCCAGGAGGCCTGTTCCTCAAGGCGTGCAATGTGCACCAGGGCTCGATTCTTGGTCCGCTGCAGAAGGCTTTCCAGACGTTCCTGGCAGGCACTGAGGCTGGCCTCACCGGCGGGCAGCAATCCAGGTTCTCTCAGCTTCTCGCAGTACCAGGCACATCCCTGCAGGAGCCACACCACGATGCCCAGCAGAGCTCGGCACAGGCCGATGCACTCCTCTGCCTTACCCTGACAGCT

Function

symbol description
med24 Predicted to enable transcription coregulator activity. Acts upstream of or within interstitial cell of Cajal differentiation; nervous system development; and thymus development. Predicted to be located in nucleus. Predicted to be part of mediator complex. Is expressed in brain; gut; and head. Used to study Hirschsprung's disease; intestinal disease; and neuropathy. Orthologous to human MED24 (mediator complex subunit 24).

NR:

description
PREDICTED: mediator of RNA polymerase II transcription subunit 24

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU49129 False 491 lncRNA 0.56 3 15079126 15081345
TU49130 True 582 lncRNA 0.55 4 15077784 15081345

Neighbor

gene id symbol gene type direction distance location
LOC103032173 NA coding upstream 41830 15032389 ~ 15035954 (+)
LOC103032486 lrrc3c,lrrc3ca,LOC107598050,LOC107716457,LOC107660473,LOC107678436 coding upstream 86485 14967880 ~ 14991299 (+)
get4 get4 coding upstream 243437 14823653 ~ 14834347 (+)
LOC103041718 LOC108435036 coding upstream 255621 14798910 ~ 14822163 (+)
LOC103041103 htra1,LOC107660481,LOC107745581 coding upstream 302587 14720879 ~ 14775197 (+)
top2a top2a coding downstream 35479 15116824 ~ 15133253 (+)
gjd3 gjd3 coding downstream 52957 15134302 ~ 15135903 (+)
LOC103030376 raraa,rara,LOC108410801,LOC107678286,LOC107745620,LOC107716487 coding downstream 143107 15224452 ~ 15383888 (+)
LOC103029630 NA coding downstream 311670 15393015 ~ 15406356 (+)
LOC103029312 NA coding downstream 326140 15407485 ~ 15423095 (+)
G36503 med24,LOC107716488,LOC107598039,LOC107706820,LOC107678252,LOC107560528 non-coding upstream 13671 15053042 ~ 15064113 (+)
G36499 NA non-coding upstream 39807 15037778 ~ 15037977 (+)
G36442 LOC103041415 non-coding upstream 283448 14793471 ~ 14794336 (+)
G36437 NA non-coding upstream 290483 14786050 ~ 14787301 (+)
LOC111192375 NA non-coding upstream 459150 14616723 ~ 14618634 (+)
G36511 med24,LOC107598039,LOC107660474 non-coding downstream 219 15081564 ~ 15083940 (+)
G36512 NA non-coding downstream 5011 15086356 ~ 15090376 (+)
LOC111192405 NA non-coding downstream 68826 15150171 ~ 15152128 (+)
G36524 NA non-coding downstream 95761 15177106 ~ 15181078 (+)
G36532 NA non-coding downstream 118477 15199822 ~ 15200073 (+)
G36439 LOC103041415 other upstream 286951 14789380 ~ 14790833 (+)
LOC107197918 NA other upstream 509872 14564925 ~ 14567912 (+)
G36371 NA other upstream 614145 14463137 ~ 14463639 (+)
LOC103039668 LOC108435045 other upstream 1557082 13502246 ~ 13520702 (+)
G35995 NA other upstream 2374728 12702305 ~ 12703056 (+)
LOC103028998 pyyb,LOC103028998,LOC108410797,LOC107745683,LOC107569181,LOC107684781,LOC107695522,LOC107753323,LOC107560546 other downstream 351484 15432829 ~ 15440157 (+)
cabcoco1 NA other downstream 1132445 16213790 ~ 16233839 (+)
sun1 NA other downstream 1919037 17000382 ~ 17040957 (+)
phf5a phf5a,PHF5A,LOC107584099,LOC102780084,LOC106609350 other downstream 2120152 17201497 ~ 17205033 (+)
cby1 cby1 other downstream 2151475 17232820 ~ 17234559 (+)

Expression


Co-expression Network