G36706


Basic Information

Item Value
gene id G36706
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 15874414 ~ 15875884 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU49449
GTATGGTGTGTCATACGTTTGTTATTGGATCGATCAATGAATGCCTGAAGGAGATCTCTTCTGAGTTCTCAACATAAGGAAAGATTTCACCAAACCCCAAAGAAAAATGCCCCATTGAGACCACAGCAGCCTTGAAACCTATTTAAACACTGCTAGAATGATTACAAATAATTGGCTTGGGGAAAGACCTTTACATCTCAGAGCCAATACATATAAGAACAGTTAAACGTTTACAGCGAGCCAGTCGACATGATACAATCGCCCGATCTCTCCTGCTCCGGGCCCGTCTGTGACTGCATAGCATAGGAAACCTTTAGCTGCGTGTGGGGACACAGTGAATCCTTACAAAGCAATACATGAATCGTGTCCATTCCCTCTGTGTGAGTCTGACAGTGCAGTGGTGTGATTAGAAAACAAGGTTAGTGACAAACAGCAGGGCTATGAGTGTGCACACAGCCTGAAAGTTGTTCACTTCTCTGGTTATGTGGCTTAAAAAGAAATCAGAAATAAGGTGAATCACATGCATCAAAATATTAGTACTCTGAGGAAACTTCAAAACAGAACTAGAGCAACGCCCATGTTCGCAGTCATTATTGAGAGGTGCagtaaattcaaaataaatgttctgCTGTTAAAATCAAGCAAGCCTGTTTTcatgtaaaaacagtttttctgtaaataattacacaaatacatgtgaagttacACCCAAGCGTTTCCTAAAAGTCGAAATCAGCATCAGCAtttcattccattccattcattCTCAAATCTCTCTTGCCAGTGCATTCACAATTGTGTACGTATCATTAGAATTTATACAGTTCTGATTTATGTACAAGATCTCCaaaaacagcattatacagCTTGACGCTATGGGTCCgagaagaagaaaatgtaaGGCGAGTGGAGAAGGTGATTAAAAAAAGTGTCCCTAGCTTTCTGTCAGTCCAcgatgctctttttttttaccatcttTGGTCACGGAATTGCTTGGGCGCCACCAGTGTTTGTCTGATCGCCAGCACTCCTCCTCCATTTAGCGCAGAAGAAGCTTCGCACCACCAGCGGTCTCGCGGCACCGTCCGGATGTcctgcgccactgactgaaagaatgagttttttttttttcatgctcaTGCGAAATCAAAAAAGGTCCTCTTCCAGAAAACCATGCGTTTATGTGAAAGCTGCACACGATTCCCCGTTCACTGATCTTCTGCCATTGCGTTTCCAGTGATCTCATTCCCAGGAAAACAATTACGAAACAAGTGCACATCTGTAAAGAAGAAAACATAAAGGTTCATTTacaaaaatggtttaaaattgcaactagcatatttttcaattctttaattttctcaaaaatcatcagtacACCTTATAATAATTCTaccggtcaggttgtaaggaacagtaaagtcactccactgaagtgcagcattataaag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU49449 True 1451 lncRNA 0.41 2 15874414 15875884

Neighbor

gene id symbol gene type direction distance location
LOC103023844 LOC108443155,LOC106596407,LOC107689097 coding upstream 62561 15808205 ~ 15811853 (+)
LOC103033971 NA coding upstream 201970 15621311 ~ 15672444 (+)
LOC103028270 mpp2,LOC108410806,LOC108273574 coding upstream 353820 15441567 ~ 15520594 (+)
LOC103029312 NA coding upstream 451319 15407485 ~ 15423095 (+)
LOC103029630 NA coding upstream 468058 15393015 ~ 15406356 (+)
rhobtb1 rhobtb1,LOC107654062,LOC107727061,LOC107695540,LOC107745661 coding downstream 273954 16149838 ~ 16175195 (+)
arid5b arid5b,LOC107727057 coding downstream 382276 16258160 ~ 16397388 (+)
nrbf2 nrbf2,LOC108437426,LOC107654066,LOC107593503 coding downstream 532080 16407964 ~ 16527247 (+)
LOC103046195 NA coding downstream 581531 16457415 ~ 16459913 (+)
LOC103044975 reep3,LOC108412837 coding downstream 840007 16715891 ~ 16752203 (+)
G36618 NA non-coding upstream 99824 15748774 ~ 15774590 (+)
G36584 NA non-coding upstream 195094 15608092 ~ 15679320 (+)
G36582 psmc5,LOC102777430,LOC107684752 non-coding upstream 326888 15541114 ~ 15547526 (+)
G36560 NA non-coding upstream 494486 15376282 ~ 15379928 (+)
G36532 NA non-coding upstream 674341 15199822 ~ 15200073 (+)
G36707 NA non-coding downstream 6573 15882457 ~ 15885873 (+)
G36705 NA non-coding downstream 21297 15897181 ~ 15898165 (+)
G36721 NA non-coding downstream 46888 15922772 ~ 15924714 (+)
G36722 NA non-coding downstream 48901 15924785 ~ 15925847 (+)
G36783 NA non-coding downstream 335161 16211045 ~ 16211697 (+)
LOC103028998 pyyb,LOC103028998,LOC108410797,LOC107745683,LOC107569181,LOC107684781,LOC107695522,LOC107753323,LOC107560546 other upstream 434257 15432829 ~ 15440157 (+)
G36439 LOC103041415 other upstream 1083581 14789380 ~ 14790833 (+)
LOC107197918 NA other upstream 1306502 14564925 ~ 14567912 (+)
G36371 NA other upstream 1410775 14463137 ~ 14463639 (+)
LOC103039668 LOC108435045 other upstream 2353712 13502246 ~ 13520702 (+)
cabcoco1 NA other downstream 337906 16213790 ~ 16233839 (+)
sun1 NA other downstream 1124498 17000382 ~ 17040957 (+)
phf5a phf5a,PHF5A,LOC107584099,LOC102780084,LOC106609350 other downstream 1325613 17201497 ~ 17205033 (+)
cby1 cby1 other downstream 1356936 17232820 ~ 17234559 (+)
LOC103027613 cdc42ep1,LOC106609444,LOC105025094,LOC106589540,LOC107734237,LOC107584101,LOC107690062 other downstream 1375097 17250981 ~ 17282231 (+)

Expression


Co-expression Network