G36805


Basic Information

Item Value
gene id G36805
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 16243077 ~ 16243333 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU49602
CTCCGCGCTCATGTGCTCAGAAACCAGCGGCGGCTCGTTGATATTAACACCTAAATGTCATTTCCTTTATATAGACTGAGTGCAATAAGTAAATGTTTGCCACATTACGGATTGTGAATCACACACGCGGCACCGGCGCTCTGCGTTTCCAATCACGGGACAAAGAAAGTTACTGTCTGGCTCCAGCTGTAATGACCTTTTTATGGGCTTCTGGTTTATTGACAGGAAACATAAAGTGTTCAGTGTACACTCTTGGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU49602 True 257 lncRNA 0.46 1 16243077 16243333

Neighbor

gene id symbol gene type direction distance location
LOC103021447 tmem26 coding downstream 34163 16196413 ~ 16208914 (-)
ank3 ank3b,ank3,LOC107654059,LOC107695539 coding downstream 216955 15874359 ~ 16026122 (-)
LOC103023209 NA coding downstream 391400 15841393 ~ 15851677 (-)
LOC103033657 NA coding downstream 464230 15772958 ~ 15778847 (-)
LOC111192378 NA coding downstream 484214 15758390 ~ 15758863 (-)
egr2 egr2,egr2b,LOC107596611,LOC107596614,LOC107653961,LOC107739063,LOC107745678 coding upstream 219995 16463328 ~ 16484145 (-)
jmjd1c jmjd1c,jmjd1cb,LOC108412835 coding upstream 294848 16538181 ~ 16713489 (-)
LOC103044660 LOC103044660,LOC108412396,LOC107653962,LOC108273895,LOC107745679,LOC107593523,LOC107596578 coding upstream 547294 16790627 ~ 16793507 (-)
exoc6 exoc6,LOC107654070 coding upstream 555184 16798517 ~ 16866094 (-)
LOC103037732 NA coding upstream 631689 16875022 ~ 16893517 (-)
G36800 NA non-coding downstream 28248 16213800 ~ 16214829 (-)
G36765 NA non-coding downstream 184442 16057465 ~ 16058635 (-)
G36755 NA non-coding downstream 292378 15949775 ~ 15950699 (-)
G36754 NA non-coding downstream 378813 15863282 ~ 15864264 (-)
LOC111192407 NA non-coding downstream 407555 15819316 ~ 15835522 (-)
G36806 NA non-coding upstream 2746 16246079 ~ 16246530 (-)
G36807 NA non-coding upstream 3207 16246540 ~ 16246771 (-)
G36836 NA non-coding upstream 161920 16405253 ~ 16405483 (-)
G36845 NA non-coding upstream 243702 16487035 ~ 16488592 (-)
G36882 NA non-coding upstream 395259 16638592 ~ 16644565 (-)
LOC103023526 ndua4,ndufa4,LOC103023526,LOC108443163,LOC107745684,LOC107684782,LOC107569184 other downstream 402561 15837105 ~ 15840516 (-)
G36677 NA other downstream 468484 15747400 ~ 15774593 (-)
c4h10orf88 LOC103041415 other downstream 1445865 14785952 ~ 14797212 (-)
p4ha1 p4ha1,p4ha1a,LOC107753313,LOC108273903,LOC107560551,LOC107684765 other downstream 2742900 13475166 ~ 13500177 (-)
lsm5 lsm5,LOC107653262,LOC107727957,LOC107674592 other downstream 2931552 13307088 ~ 13311525 (-)
LOC103043629 LOC108412394 other upstream 670237 16913570 ~ 16915285 (-)
G37183 NA other upstream 772795 17016128 ~ 17018918 (-)
crym rac1,RAC1,rac1a,crym,LOC105898786,LOC108412270,LOC108437155,LOC107569188 other upstream 804274 17047607 ~ 17062947 (-)
LOC103030148 csdc2,LOC105919973,LOC102235694 other upstream 936014 17179347 ~ 17184427 (-)
LOC103024241 maff,LOC107690056,LOC107692071,LOC107554043,LOC107584105,LOC107734233 other upstream 1130851 17374184 ~ 17381733 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) G192585 NA non-coding NC_047606.1 CM018552.1 7842060 ~ 7842634 (-)