G36899 (cyp26a1,LOC103044660,LOC108412396,LOC108273895,LOC107739064,LOC107596578,LOC107695519,LOC107653962,LOC107593523,LOC107745679)


Basic Information

Item Value
gene id G36899
gene name cyp26a1,LOC103044660,LOC108412396,LOC108273895,LOC107739064,LOC107596578,LOC107695519,LOC107653962,LOC107593523,LOC107745679
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 16733612 ~ 16792600 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU49715
AGCAAATAGTAATTTAAATAAGTTGCATTCAGTACAAAAcactaaatgtatatataaaaacaaagctACATTACAAATATACATCACAGACACCTCAAAGAAATAAAGTGATCCATGAAAGAGTAGTGCCCTTTGTTAAAAATGGATATATACAGATCTATTATATaaaccaaaatataaaaatgtcatACGTCACATTTCATCTAATGCCTATGTACAATGCTTACGCTAGCAGCTCAAGCCGGAGTTAATGTATTAATTGCTGATGTAAGGGGTGAACTTTGTGGGAAGATTGTCCACGGGGTACACTGTTGGGCCCGTTTTCATTGTCGGAGGTCCGTTTAAAAGTGTCCAGTTGCACTGCTGCACTAGCTCGACTAAAAAGATCTTGAGCAGCACTTTGGCAAACTCTTTGCCCACACACATCCTGGAGCCTCCTCCGAAGGGGATGTAGTTAAACCTGGAACTGTCCTCCAAGCCTTTGGTCATGAATCGCTCCGGCTGAAATTCCTCTTTGTTGGGGAAGACATCTGCAACATCGTGTGTGTcacaaatgctgtaaatgacattcCATCCTTTGGGAATCTGGTAGCCATTGAGCTCAAACGTCTTAAGTGCCACACGAAATCCTCCAGGTACAGGTGGATTTATTCTGAGTGTTTCCTTAAGGACACAGCCAGTGTATTTTAGCTGTTCCAGGATCTCCATGTTTAGAGCTTTCCCAGGTGAATGCAAGCTGGAAATATCCTGCTCTTTCAGCTCGTCTCTAATTCGTTCAACCACCTCTGGATTCAGCCCCAGGAACATGACTAGAGAAGTAGCTGTGCTAGCTGTGGTCTCGTGGCCTCCAAAGAGTAGTTCAGTTGCGGACTCCTTCATAGCCTGCATGCTAAGTGGCTCATTACTCTTCCTGCTGTTTTCAATCAACAGCTGAAGCGCGTCCTTGTGTTTTGGTTCGTTTTCGTTGTCGCCAtcttggattttctttttaatattctccTCTATTTTGGCGTGGATGAAGTTTCGCGCTTTCAGCCCccGATATAAACCGCTGAAAGGGACGTCAATGGGAAGAGAGAACAGGTTCTTGATCATCTCCTCGAAGGCTTCGACCAGCTCCTGCTCGTCGGTCTTGATCTGGTCCGGCTCGAAGCCCAGTAAAATCCTCATGGCGATGCGGAACATGAGGCGCTTCATGTCGGGGTAGACGAGCACGCAGGGGGCGCGCTGCAGCCAGTCCTGCACGGCGCTCCGCACCTCCTCCCGGATCACCGGGATGTAGTGCTCCAGAGCATCCCGGGAGAATG
>TU49716
tttttttattttttTTTTGCAATGTAGTcacaatgttttattaaataaagcccATACAGCAAATAGTAATTTAAATAAGTTGCATTCAGTACAAAAcactaaatgtatatataaaaacaaagctACATTACAAATATACATCACAGACACCTCAAAGAAATAAAGTGATCCATGAAAGAGTAGTGCCCTTTGTTAAAAATGGATATATACAGATCTATTATATaaaccaaaatataaaaatgtcatACGTCACATTTCATCTAATGCCTATGTACAATGCTTACGCTAGCAGCTCAAGCCGGAGTTAATGTATTAATTGCTGATGTAAGGGGTGAACTTTGTGGGAAGATTGTCCACGGGGTACACTGTTGGGCCCGTTTTCATTGTCGGAGGTCCGTTTAAAAGTGTCCAGTTGCACTGCTGCACTAGCTCGACTAAAAAGATCTTGAGCAGCACTTTGGCAAACTCTTTGCCCACACACATCCTGGAGCCTCCTCCGAAGGGGATGTAGTTAAACCTGGAACTGTCCTCCAAGCCTTTGGTCATGAATCGCTCCGGCTGAAATTCCTCTTTGTTGGGGAAGACATCTGCAACATCGTGTGTGTcacaaatgctgtaaatgacattcCATCCTTTGGGAATCT

Function

symbol description
cyp26a1 Enables retinoic acid 4-hydroxylase activity. Acts upstream of or within several processes, including animal organ development; cellular response to vitamin A; and retinoid metabolic process. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Is expressed in several structures, including head; mesoderm; neural plate; pleuroperitoneal region; and presumptive neural plate. Used to study holoprosencephaly. Orthologous to human CYP26A1 (cytochrome P450 family 26 subfamily A member 1).

NR:

description
cytochrome P450 26A1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU49715 True 1307 lncRNA 0.46 5 16790670 16792600
TU49716 False 644 lncRNA 0.38 2 16733612 16791256

Neighbor

gene id symbol gene type direction distance location
nrbf2 nrbf2,LOC108437426,LOC107654066,LOC107593503 coding upstream 206365 16407964 ~ 16527247 (+)
LOC103046195 NA coding upstream 273699 16457415 ~ 16459913 (+)
arid5b arid5b,LOC107727057 coding upstream 336224 16258160 ~ 16397388 (+)
rhobtb1 rhobtb1,LOC107654062,LOC107727061,LOC107695540,LOC107745661 coding upstream 558417 16149838 ~ 16175195 (+)
LOC103023844 LOC108443155,LOC106596407,LOC107689097 coding upstream 921759 15808205 ~ 15811853 (+)
tubgcp2 tubgcp2,gcp2 coding downstream 136911 16929511 ~ 16943394 (+)
LOC103036473 myof coding downstream 152464 16945064 ~ 16998115 (+)
LOC103034053 rac1,RAC1,rac1a,LOC105898786,LOC108412270,LOC108437155,LOC107569188 coding downstream 254984 17047584 ~ 17054418 (+)
LOC103033077 LOC108412267,LOC108274277,LOC107596603,LOC107695555 coding downstream 276336 17068936 ~ 17079779 (+)
LOC103032462 cunh16orf52,c16orf52.L,c17h16orf52,C20H16orf52,LOC102224510,LOC106518731,LOC108258941 coding downstream 289713 17082313 ~ 17092610 (+)
G36852 NA non-coding upstream 164220 16540984 ~ 16569392 (+)
LOC111192379 NA non-coding upstream 193598 16529150 ~ 16540014 (+)
G36783 NA non-coding upstream 521915 16211045 ~ 16211697 (+)
G36722 NA non-coding upstream 807765 15924785 ~ 15925847 (+)
G36721 NA non-coding upstream 808898 15922772 ~ 15924714 (+)
G36915 NA non-coding downstream 43926 16836526 ~ 16837964 (+)
LOC103038048 NA non-coding downstream 70470 16863070 ~ 16866954 (+)
G36959 NA non-coding downstream 144412 16937012 ~ 16938031 (+)
G36957 NA non-coding downstream 227666 17020266 ~ 17020567 (+)
G36962 NA non-coding downstream 230168 17022768 ~ 17023415 (+)
cabcoco1 NA other upstream 499773 16213790 ~ 16233839 (+)
LOC103028998 pyyb,LOC103028998,LOC108410797,LOC107745683,LOC107569181,LOC107684781,LOC107695522,LOC107753323,LOC107560546 other upstream 1293455 15432829 ~ 15440157 (+)
G36439 LOC103041415 other upstream 1942779 14789380 ~ 14790833 (+)
LOC107197918 NA other upstream 2165700 14564925 ~ 14567912 (+)
G36371 NA other upstream 2269973 14463137 ~ 14463639 (+)
sun1 NA other downstream 207782 17000382 ~ 17040957 (+)
phf5a phf5a,PHF5A,LOC107584099,LOC102780084,LOC106609350 other downstream 408897 17201497 ~ 17205033 (+)
cby1 cby1 other downstream 440220 17232820 ~ 17234559 (+)
LOC103027613 cdc42ep1,LOC106609444,LOC105025094,LOC106589540,LOC107734237,LOC107584101,LOC107690062 other downstream 458381 17250981 ~ 17282231 (+)
tnrc6b tnrc6b other downstream 504879 17297479 ~ 17340892 (+)

Expression


Co-expression Network