G36922 (reep3)


Basic Information

Item Value
gene id G36922
gene name reep3
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 16742832 ~ 16752168 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU49748
CCAGCACGTTAATTTAGACTTATGACACATTCAGACAAACATTCCCACATTTCATCCACCTGATATAGTGGATTGTAACACTTTGGTATATGTAGATAAGATGGTCCTCTTCCCAGACTAGGGGTACATTCTGCACTGAGATGATGGACAAGAAAATgatgaaaatgtgcaaaaaagaaACCATCAGAAACGGAAACACAAccacacatttaaaatgtagtcCACCTTCAccaatacttataataatataatgatctGAATCCCCTTCATtcattttggtgtttttttcctttaatggtAAGGGTCACTTTTGGTCTGATTGTATTCAAGTGTCAGTGTTATCATTATGCATTTAattagaaatggaaaaaaaatctaatttaaaatctGTAATAAACAAGGCAGCACAAGagacacacaaaacaacaagagCACAAAACCCACATCCGATAGAATACAGTTCTAGCTGTGAACACTTTAAACACtagcaaatataaaaatactaatagATTTGACTGAATGTCAAATTCAGAAAAAGGTCACcaagcaataaaaaaactacaacaaGAAGAAAAGCCCCTGAAATTCCACATTATTGCTCATAATGTACATGTGCACACTTGTGTTTTTGGTTAAAACTtggattttaataaaataaatatgtgtgtgtgtgtgtgtgttgcattaAAAACCTACAGGATGTTCAGCACAAGAATGGATCCCACAGCCATTAAAAGAAGAAGGTATTATTAACACTCATTAGGTTTCTGTGGATAGAGCTCTCCTGGGTCAGTAGTCACTGGTCAGTGCTGGCGTACGTCATAGTGTTCAGTACTGGCCTTCGCCGCCCTTTGATCTTCAGGGATCCATAACGGGCATCTTTGCGTAGTCTGGAGCGCGTCACTTTAACACTCTGCGATCTTCTGACTCCACGCTGCGTCAAAGCCTCGTCCTCGGAGAACACACCATCACCCTCGCCATCTTCATCTGTCCGCTCCTCCTGCTCATACTGGTAATAATCGACTACGTCGTGCTGGGTGGTGCCTGCGCCTCTCCTGGCCGGGTTAGAGCTGGAGTAGGCAGGGTACATCTGGCCGCCGGCCTCATCCTGCGGGATCTGGGTCAGGTCGGCCATGCTGAAGCTCCTCAGCTTCTCCGTGA

Function

symbol description
reep3 Predicted to enable microtubule binding activity. Involved in mitotic nuclear membrane reassembly. Predicted to be integral component of membrane. Predicted to be active in cytoplasmic microtubule; endoplasmic reticulum membrane; and endoplasmic reticulum tubular network.

NR:

description
receptor expression-enhancing protein 3 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU49748 True 1161 lncRNA 0.42 3 16742832 16752168

Neighbor

gene id symbol gene type direction distance location
jmjd1c jmjd1c,jmjd1cb,LOC108412835 coding downstream 29343 16538181 ~ 16713489 (-)
egr2 egr2,egr2b,LOC107596611,LOC107596614,LOC107653961,LOC107739063,LOC107745678 coding downstream 258687 16463328 ~ 16484145 (-)
LOC103021447 tmem26 coding downstream 533918 16196413 ~ 16208914 (-)
ank3 ank3b,ank3,LOC107654059,LOC107695539 coding downstream 716710 15874359 ~ 16026122 (-)
LOC103023209 NA coding downstream 891155 15841393 ~ 15851677 (-)
LOC103044660 LOC103044660,LOC108412396,LOC107653962,LOC108273895,LOC107745679,LOC107593523,LOC107596578 coding upstream 38459 16790627 ~ 16793507 (-)
exoc6 exoc6,LOC107654070 coding upstream 46349 16798517 ~ 16866094 (-)
LOC103037732 NA coding upstream 122854 16875022 ~ 16893517 (-)
LOC103032763 snu13,nh2l1,snu13b,LOC105898651,LOC105031476,LOC105910236 coding upstream 313235 17065403 ~ 17067982 (-)
trnal-uag_1 NA coding upstream 343077 17095245 ~ 17095326 (-)
G36882 NA non-coding downstream 98267 16638592 ~ 16644565 (-)
G36845 NA non-coding downstream 254240 16487035 ~ 16488592 (-)
G36836 NA non-coding downstream 337349 16405253 ~ 16405483 (-)
G36807 NA non-coding downstream 496061 16246540 ~ 16246771 (-)
G36806 NA non-coding downstream 496302 16246079 ~ 16246530 (-)
G37185 sun1 non-coding upstream 248204 17000372 ~ 17015898 (-)
G37189 NA non-coding upstream 268553 17020721 ~ 17020928 (-)
G37186 NA non-coding upstream 274289 17026457 ~ 17026942 (-)
G37191 sun1 non-coding upstream 284388 17036556 ~ 17040941 (-)
G37206 NA non-coding upstream 339574 17091742 ~ 17092051 (-)
LOC103023526 ndua4,ndufa4,LOC103023526,LOC108443163,LOC107745684,LOC107684782,LOC107569184 other downstream 902316 15837105 ~ 15840516 (-)
G36677 NA other downstream 968239 15747400 ~ 15774593 (-)
c4h10orf88 LOC103041415 other downstream 1945620 14785952 ~ 14797212 (-)
p4ha1 p4ha1,p4ha1a,LOC107753313,LOC108273903,LOC107560551,LOC107684765 other downstream 3242655 13475166 ~ 13500177 (-)
lsm5 lsm5,LOC107653262,LOC107727957,LOC107674592 other downstream 3431307 13307088 ~ 13311525 (-)
LOC103043629 LOC108412394 other upstream 161402 16913570 ~ 16915285 (-)
G37183 NA other upstream 263960 17016128 ~ 17018918 (-)
crym rac1,RAC1,rac1a,crym,LOC105898786,LOC108412270,LOC108437155,LOC107569188 other upstream 295439 17047607 ~ 17062947 (-)
LOC103030148 csdc2,LOC105919973,LOC102235694 other upstream 427179 17179347 ~ 17184427 (-)
LOC103024241 maff,LOC107690056,LOC107692071,LOC107554043,LOC107584105,LOC107734233 other upstream 622016 17374184 ~ 17381733 (-)

Expression


Co-expression Network